View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12356_high_35 (Length: 260)
Name: NF12356_high_35
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_high_35 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 30891198 - 30890958
Alignment:
| Q |
18 |
gacaatggaaaggaagaaaaaagttagaaagatatcttagatatgcagaacacctttcgaaccaccaaaagccaataaatctagcattagagggaacaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30891198 |
gacaatggaaaggaagaaaaaagttagaaagatatcttagatatgcagaacacctttcgaaccaccaaaagccaataaatctagcattagagggaacaaa |
30891099 |
T |
|
| Q |
118 |
acacccaaaaagcatcatagcaaaccaaacaaatcatttatcataaacnnnnnnnnnnnnaataaaagaggattgacttc-aaaaaacgaataagaacta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30891098 |
acacccaaaaagcatcatagcaaaccaaacaaatcatttatcatacac---attttttttaataaaagaggattgacttcaaaaaaacgaataagaacta |
30891002 |
T |
|
| Q |
217 |
cgttacatgaatgtttttagatatgtaagtcccaaaaatgtcat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30891001 |
cgttacatgaatgtttttagatatgtaagtcccaaaaatgtcat |
30890958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University