View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_high_7 (Length: 523)
Name: NF12356_high_7
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_high_7 |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 140 - 506
Target Start/End: Complemental strand, 5521245 - 5520879
Alignment:
| Q |
140 |
cacccgcacctcccctaatccaaacattgtccgccgctggaaaccagcaaaatagcacccaacagcccagtccaaaaaacaccagctctcacctcttatt |
239 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5521245 |
cacccgcacctcccctaatccaaacattgttcgtcgctggaaaccagcaaaacagcacccaacagcccagtccaaaaaacaccagctctcacctcttatt |
5521146 |
T |
|
| Q |
240 |
caagcactctctcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagacaacgccttaatgtctatg |
339 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5521145 |
caagcactctatcggattccaacaccactcataataaaggcaatatgctatccgtaatatactcaaagaccaacacaaagacaacgccttaatgtctatg |
5521046 |
T |
|
| Q |
340 |
tgcggtgggcatcgtcatcctagcttttgatagtgagattaataaagctcatttaacatgatatcagagccgaactaatgtggaaatttgtgaattggac |
439 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5521045 |
tgtggtgggcatcgtcatcctagctttcgatagtgagattaataaagctcatttaacatgatatcagagtcgaactaatgtggaaatttgtgaattggac |
5520946 |
T |
|
| Q |
440 |
tctgaatccatgttagatgtgattgtgtgctatgtgttggattcttaaatttattggatgcatatat |
506 |
Q |
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| T |
5520945 |
tatgaatccatgttagatgtgattgtgtgctatgtgttggattcttaaatttattggatgcatatat |
5520879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 5521374 - 5521319
Alignment:
| Q |
11 |
cacagaggccaaaactgacaggaaagggagaaaatcaggcacatgtcgccacccaa |
66 |
Q |
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| T |
5521374 |
cacagaggtcaaaactggcggaaaagggagaaaatcaggcacaagtcaccacccaa |
5521319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 27245958 - 27246005
Alignment:
| Q |
219 |
caccagctctcacctcttattcaagcactctctcggattccaacacca |
266 |
Q |
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| T |
27245958 |
caccagccatcacctcctattcaagcattctctcggattccaacacca |
27246005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 51042342 - 51042261
Alignment:
| Q |
251 |
tcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagacaacgccttaat |
332 |
Q |
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|||||||||||||||||||||| ||||||||| | |||||||||||| ||||||| ||||||||| | |||||| ||||||| |
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| T |
51042342 |
tcggattccaacaccactcatagtaaaggcaagaggcaatccgtaatctactcaacgaccaacaccacgacaaccccttaat |
51042261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 18922968 - 18922887
Alignment:
| Q |
251 |
tcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagacaacgccttaat |
332 |
Q |
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|
|||||||||||||||||||||| ||||||||| | |||||||||||| ||||||| ||||||||| | |||||| ||||||| |
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| T |
18922968 |
tcggattccaacaccactcatagtaaaggcaagaggcaatccgtaatctactcaacgaccaacaccacgacaaccccttaat |
18922887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 28060295 - 28060373
Alignment:
| Q |
253 |
ggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagacaacgccttaa |
331 |
Q |
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||||||||||||||||| ||| | || ||| |||| |||| ||| ||||||| | ||||||| ||||||||||||||| |
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| T |
28060295 |
ggattccaacaccactcgtaaaagagacaagatgcgatccttaacctactcaacgcccaacaccaagacaacgccttaa |
28060373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 6829258 - 6829214
Alignment:
| Q |
238 |
ttcaagcactctctcggattccaacaccactcataataaaggcaa |
282 |
Q |
| |
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||||| || |||||||||||||| |||||||||||||| |||||| |
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| T |
6829258 |
ttcaaacattctctcggattccagcaccactcataatagaggcaa |
6829214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 8993 - 9082
Alignment:
| Q |
243 |
gcactctctcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagacaacgccttaat |
332 |
Q |
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||||| || ||| |||||||||||||| || |||||||| | ||||||| |||| |||||||||||||||| |||||| ||||||||| |
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| T |
8993 |
gcactttcacgggttccaacaccactcgtagaaaaggcaagaagcaatccttaatctactcaaagaccaacatcaagacaccgccttaat |
9082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 4913370 - 4913448
Alignment:
| Q |
244 |
cactctctcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagaca |
322 |
Q |
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|||||||||||||||||||||||||| ||| | || ||| | || |||| ||| ||||||||||||||||| |||||| |
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| T |
4913370 |
cactctctcggattccaacaccactcgtaaaagagacaagaagctatcctcaatctactcaaagaccaacaccaagaca |
4913448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 20672431 - 20672337
Alignment:
| Q |
238 |
ttcaagcactctctcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagacaacgccttaat |
332 |
Q |
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|
|||||||| || ||||||| |||||||||||||| | |||||| ||||||||| ||| ||||||| | ||||||| ||||||| |||||||| |
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| T |
20672431 |
ttcaagcattccttcggatttgaacaccactcataaaagaggcaagatgcaatccttaacctactcaacgcccaacaccaagacaaagccttaat |
20672337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 43441336 - 43441415
Alignment:
| Q |
243 |
gcactctctcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagaca |
322 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | | |||| | | |||| ||| ||||||||||||||||| |||||| |
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|
| T |
43441336 |
gcactctctcggattccaacaccactcgtaaaagaagcaagaaactatcctcaatctactcaaagaccaacaccaagaca |
43441415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 41667 - 41714
Alignment:
| Q |
219 |
caccagctctcacctcttattcaagcactctctcggattccaacacca |
266 |
Q |
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||||||| ||||||| |||||||||| |||||||||||||||||||| |
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| T |
41667 |
caccagccatcacctcctattcaagcattctctcggattccaacacca |
41714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 30995509 - 30995420
Alignment:
| Q |
243 |
gcactctctcggattccaacaccactcataataaaggcaatatgcaatccgtaatatactcaaagaccaacacaaagacaacgccttaat |
332 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | |||||| |||| ||||| | | | ||| ||||||||| |||||| ||||||||| |
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|
| T |
30995509 |
gcactctctcggattccaacaccattcgtaaaataggcaagatgcgatccgaagtcgagacaaggaccaacaccaagacaccgccttaat |
30995420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 7898537 - 7898505
Alignment:
| Q |
241 |
aagcactctctcggattccaacaccactcataa |
273 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
7898537 |
aagcactctctcggattccaacaccattcataa |
7898505 |
T |
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