View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12356_high_8 (Length: 493)
Name: NF12356_high_8
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_high_8 |
 | |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Original strand, 27776244 - 27776727
Alignment:
| Q |
11 |
cagagaccactcaaact-acatcagggtgaattgaatcagaaatcttgaggaggagcacattttcaggtcccaagacaatatgatcatgtcagcccaagt |
109 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27776244 |
cagaaaccactcaaactgacatcagggtgaatcgaaccagaaactttgaggaggagcacactttcaggtcccaagacaatatgatcatgtcagcccaagt |
27776343 |
T |
|
| Q |
110 |
aggttactaacatcattttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27776344 |
aggttactaacatcattttgaaacatcaacaggaaattcatgaagctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacac |
27776443 |
T |
|
| Q |
210 |
caaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27776444 |
caaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacat |
27776543 |
T |
|
| Q |
310 |
accaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggcccaatttgccaatcacttaatccaagcactttttgtatctcatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27776544 |
accaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcatc |
27776643 |
T |
|
| Q |
410 |
ttgaacaccttttccaccagtatgactacaaaaatgctcaaaacatagcttaaaatcaggtgtataaaccctaattttggaatt |
493 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27776644 |
ttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacatagcttaaaatcaggtgtataaaccctaattttggaatt |
27776727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 185 - 365
Target Start/End: Complemental strand, 10280138 - 10279958
Alignment:
| Q |
185 |
aggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccc |
284 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||| ||| ||||||||||| ||||| || |||||||||||| ||| || || | | || ||| |
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|
| T |
10280138 |
aggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccc |
10280039 |
T |
|
| Q |
285 |
ttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggc |
365 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||| || || ||||||||||| |||||||||||||||||| |
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|
| T |
10280038 |
ttagcttcacaataagacaattcataccaaacagaacttgatgatgtgttaccatatctatatagtgtcattcttgaaggc |
10279958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 127 - 477
Target Start/End: Original strand, 19742722 - 19743072
Alignment:
| Q |
127 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
226 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
19742722 |
ttgaaacatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttaca |
19742821 |
T |
|
| Q |
227 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactactt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
19742822 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactactt |
19742921 |
T |
|
| Q |
327 |
gaagtatttccatatctataaagtgtcattcttgaaggcccaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccac |
426 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| | | ||| |||||||||| || ||||||||||| |||||||| |||| ||||||||| |
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|
| T |
19742922 |
gaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatcacttaaccccagcactttttgaatctcatcaagaaccgcttttccac |
19743021 |
T |
|
| Q |
427 |
cagtatgactacaaaaatgctcaaaacatagcttaaaatcaggtgtataaa |
477 |
Q |
| |
|
| |||||| |||||| || |||||||| | |||||||||||||||||||| |
|
|
| T |
19743022 |
ccgtatgaacacaaaagtggtcaaaacacaacttaaaatcaggtgtataaa |
19743072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 127 - 477
Target Start/End: Complemental strand, 19797366 - 19797016
Alignment:
| Q |
127 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
226 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19797366 |
ttgaaacatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttaca |
19797267 |
T |
|
| Q |
227 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactactt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
19797266 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactactt |
19797167 |
T |
|
| Q |
327 |
gaagtatttccatatctataaagtgtcattcttgaaggcccaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccac |
426 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| | | ||| |||||||||| || ||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
19797166 |
gaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatcacttaaccccagcactttttgaatctcatcaagaaccgcttttccac |
19797067 |
T |
|
| Q |
427 |
cagtatgactacaaaaatgctcaaaacatagcttaaaatcaggtgtataaa |
477 |
Q |
| |
|
| |||||| |||||| || |||||||| | |||||||||||||||||||| |
|
|
| T |
19797066 |
ccgtatgaacacaaaagtggtcaaaacacaacttaaaatcaggtgtataaa |
19797016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 127 - 477
Target Start/End: Original strand, 19539679 - 19540029
Alignment:
| Q |
127 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
226 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
19539679 |
ttgaaacatcaacaggaaactcacttatctcatcactccaaggattgatctctttaattggatcaacattctttaatgcacaccaaacagcagtgttaca |
19539778 |
T |
|
| Q |
227 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactactt |
326 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
19539779 |
cttaaatctagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacaaaactactt |
19539878 |
T |
|
| Q |
327 |
gaagtatttccatatctataaagtgtcattcttgaaggcccaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccac |
426 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| | | ||| ||||||||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
19539879 |
gaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatcacttaatcctagcactttttgtatctcatcaagaaccgcttttccac |
19539978 |
T |
|
| Q |
427 |
cagtatgactacaaaaatgctcaaaacatagcttaaaatcaggtgtataaa |
477 |
Q |
| |
|
| |||||| |||||| || |||||||| | |||||||||||||||||||| |
|
|
| T |
19539979 |
ccgtatgaacacaaaagtggtcaaaacacaacttaaaatcaggtgtataaa |
19540029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 127 - 477
Target Start/End: Original strand, 19671602 - 19671952
Alignment:
| Q |
127 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
226 |
Q |
| |
|
|||||||||||| |||||| ||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
19671602 |
ttgaaacatcaagaggaaactcacttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacaggagtgttaca |
19671701 |
T |
|
| Q |
227 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactactt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
19671702 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcatactcttcctttagcttcacaatatgccaactcataccaaacagaactactt |
19671801 |
T |
|
| Q |
327 |
gaagtatttccatatctataaagtgtcattcttgaaggcccaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccac |
426 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| | | ||| |||||||||| || |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
19671802 |
gaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatcacttaaccctagcactttttgtatctcatcaagaaccgcttttccac |
19671901 |
T |
|
| Q |
427 |
cagtatgactacaaaaatgctcaaaacatagcttaaaatcaggtgtataaa |
477 |
Q |
| |
|
| |||||| |||||| || |||||||| | |||||||||||||||||||| |
|
|
| T |
19671902 |
ccgtatgaacacaaaagtggtcaaaacacaacttaaaatcaggtgtataaa |
19671952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Complemental strand, 26453373 - 26453320
Alignment:
| Q |
423 |
ccaccagtatgactacaaaaatgctcaaaacatagcttaaaatcaggtgtataa |
476 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
26453373 |
ccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatataa |
26453320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 132 - 382
Target Start/End: Complemental strand, 34053481 - 34053231
Alignment:
| Q |
132 |
acatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaa |
231 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| |||| ||||| |||||||| | |||||||| |||| || |||| ||| |||||| |||||||||||| |
|
|
| T |
34053481 |
acatgaacaggaaactcatgaatctcatccatccatggatttttctccttagctggatcaacggtcctcaatgcacgccacacagcactgttacatttaa |
34053382 |
T |
|
| Q |
232 |
atccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagt |
331 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||| || ||||| || ||||||||| ||||||||| ||||||| | |||||||| ||||| |
|
|
| T |
34053381 |
atccagaaccaaatgcaatttgccaagtcctatcaccttttctaatcctccctttagcttcagtataagccaattcataccataatgaactactagaagt |
34053282 |
T |
|
| Q |
332 |
atttccatatctataaagtgtcattcttgaaggcccaatttgccaatcact |
382 |
Q |
| |
|
||| ||| |||||| |||||||||||||| || | || ||||||||||| |
|
|
| T |
34053281 |
attaccaaatctatttagtgtcattcttgatggttccatatgccaatcact |
34053231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 132 - 469
Target Start/End: Complemental strand, 15239782 - 15239445
Alignment:
| Q |
132 |
acatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaa |
231 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||| |||||||||| ||||||| |||||| || | || | || || |||||||||| | ||||| |||| |
|
|
| T |
15239782 |
acatgaacaggaaactcatgaatctcatcaatccaaggattcttctcctttgcaggattaatagtcttcaatgctttccaaacagcactattacacttaa |
15239683 |
T |
|
| Q |
232 |
atccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagt |
331 |
Q |
| |
|
| ||||| |||||||||||||||||| | ||||||||||| | ||||| || ||||||||| ||||||||| ||||||| | |||||||| ||||| |
|
|
| T |
15239682 |
aaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattcataccacaatgaactactagaagt |
15239583 |
T |
|
| Q |
332 |
atttccatatctataaagtgtcattcttgaaggcccaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagta |
431 |
Q |
| |
|
|| ||| |||||| |||||||| ||||| || | || |||||||||||||| |||| ||| | | |||||| |||| || ||||||||| | |
|
|
| T |
15239582 |
gttaccaaatctattcagtgtcatccttgatggttccatatgccaatcacttaaatcaagatttttctccaactcatccaaaacagctcttccaccagca |
15239483 |
T |
|
| Q |
432 |
tgactacaaaaatgctcaaaacatagcttaaaatcagg |
469 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
15239482 |
tgaatacaaaaatgctcaaaagctaatttaaaatcagg |
15239445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 27445061 - 27445001
Alignment:
| Q |
49 |
gaaatcttgaggaggagcacattttcaggtcccaagacaatatgatcatgtcagcccaagt |
109 |
Q |
| |
|
|||| |||||||||||||||| | || ||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
27445061 |
gaaaccttgaggaggagcacactctctggtcccaagtcaataccatcatgtcaacccaagt |
27445001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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