View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12356_low_13 (Length: 402)
Name: NF12356_low_13
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 23053634 - 23053757
Alignment:
| Q |
180 |
aataaaatcactaaaatcaaatatttttaaatctcaatgcaccacatgcacaaactttatacaccatttaagatttttaataagtgttcacttatacgac |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
23053634 |
aataaaatcactaaaatcaaatatttttaaatctcaatgcactacatgcacaaactttatacaccatttaagatttttaataagtgttcacttgtactac |
23053733 |
T |
|
| Q |
280 |
tagttagtattttcttatatttaa |
303 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
23053734 |
tatttagtattttcttatatttaa |
23053757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 23053463 - 23053576
Alignment:
| Q |
7 |
gaacctgtgaaggagagagaccagaaggaaacgatgcaagaagcttgaaggaggaaggttctgtattactcgaatcaccagcttctttcttcttctccat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23053463 |
gaacctgtgaaggagagagaccagaaggaaacgatgcaagaagcttgaaggaggaaggttctgtattactcgaatcaccagcttctttcttcttctccat |
23053562 |
T |
|
| Q |
107 |
agttaagttcatga |
120 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
23053563 |
cgttaagttgatga |
23053576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University