View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_15 (Length: 396)
Name: NF12356_low_15
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 27589898 - 27589534
Alignment:
| Q |
18 |
gtattgtggaatcctgctactgatgaattacatattgttgctgaggaccacaattattgtgttattgagggattttatgatgatagagacattgcctata |
117 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
27589898 |
gtattgtggaatcccgctaccgatgaattacatattgttgctgaggaccacgattattgtgttattgacggattttatgatgatagagacattacctata |
27589799 |
T |
|
| Q |
118 |
ctattcatggattcggttatgacaatgttagtgatgattataagattattcgatatgtttattatcatggaaagcttgatactctttgggatggccccta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27589798 |
ctattcatggattcggttatgacaatgttagtgatgattataagattattcgatatgttgattatcatggaaagcttgatactctttgggatggcccctc |
27589699 |
T |
|
| Q |
218 |
ttgggaaatatatagtttaaaaggtaactattgggatgcaatcaatgttgatatgccacactgttgttggaggacggcagttgttggagttcacttggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || || ||||||||||||||||||| |
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| T |
27589698 |
ttgggaaatatatagtttaaaaggtaactattgggatgcaatcaatgttgatatgccaaactgttgttggagtaaggtaggtgttggagttcacttggat |
27589599 |
T |
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| Q |
318 |
ggagtgtgccattggttgggaaaaacagattctgaaacatatgtggtatcatttaacttgagcac |
382 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27589598 |
ggagtgtgccattggttgggaataacagattctgaaacatatgtggtatcatttaacttgagcac |
27589534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 27595949 - 27595585
Alignment:
| Q |
18 |
gtattgtggaatcctgctactgatgaattacatattgttgctgaggaccacaattattgtgttattgagggattttatgatgatagagacattgcctata |
117 |
Q |
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| T |
27595949 |
gtattgtggaatcccgctaccgatgaattacatattgttcctaaggaccacgattattatgttatttccgacttttctgatgatagagacattacctata |
27595850 |
T |
|
| Q |
118 |
ctattcatggattcggttatgacaatgttagtgatgattataagattattcgatatgtttattatcatggaaagcttgatactctttgggatggccccta |
217 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||| |
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| T |
27595849 |
ctgttcatggattcggttatgacaatgttagcgatgattataagattattcgatatgttgattatcatggaaagcttgacactctttggcaaggccccta |
27595750 |
T |
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| Q |
218 |
ttgggaaatatatagtttaaaaggtaactattgggatgcaatcaatgttgatatgccacactgttgttggaggacggcagttgttggagttcacttggat |
317 |
Q |
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| T |
27595749 |
ttgggaaatatatagtttagagagtaacttttgggagacactttatgttgatatgcgacatcgtttttggagttcggtaggtgctggggttcacttggat |
27595650 |
T |
|
| Q |
318 |
ggagtgtgccattggttgggaaaaacagattctgaaacatatgtggtatcatttaacttgagcac |
382 |
Q |
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|||||||||||||||| | | ||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
27595649 |
ggagtgtgccattggtggagcaaagaagattgtgaaacatatgtggtatcatttaacttgagcac |
27595585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 27717476 - 27717414
Alignment:
| Q |
113 |
ctatactattcatggattcggttatgacaatgttagtgatgattataagattattcgatatgt |
175 |
Q |
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|
|||||||||||||||||| || |||||| ||||||| ||||| ||||| || |||| |||||| |
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| T |
27717476 |
ctatactattcatggatttggctatgaccatgttagagatgactataaaatcattcaatatgt |
27717414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 34324900 - 34324946
Alignment:
| Q |
121 |
ttcatggattcggttatgacaatgttagtgatgattataagattatt |
167 |
Q |
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|||||||||| ||||||||| ||||||| ||||| |||||||||||| |
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| T |
34324900 |
ttcatggatttggttatgaccatgttagagatgactataagattatt |
34324946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 44142011 - 44141983
Alignment:
| Q |
18 |
gtattgtggaatcctgctactgatgaatt |
46 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44142011 |
gtattgtggaatcctgctactgatgaatt |
44141983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 381
Target Start/End: Complemental strand, 19225801 - 19225636
Alignment:
| Q |
216 |
tattgggaaatatatagtttaaaaggtaactattgggatgcaatcaatgttgatatgccacactgttgttggaggacggcagttgttggagttcacttgg |
315 |
Q |
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|||||||| ||||||||| ||||| |||||| |||| | | | |||||||||||| | | |||| ||||||| ||| || |||| | ||| ||||| |
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| T |
19225801 |
tattgggacatatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgcaaaattgttattggaggtcggtaggtgtttgggtttacttga |
19225702 |
T |
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| Q |
316 |
atggagtgtgccattggttgggaaaaacagattctgaaacatatgtggtatcatttaacttgagca |
381 |
Q |
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|||||||||||||||||| ||| ||||| || ||| ||||||||||||||||||||||||||| |
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| T |
19225701 |
atggagtgtgccattggtagggggaaacaaatagcgaatcatatgtggtatcatttaacttgagca |
19225636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 19221358 - 19221390
Alignment:
| Q |
350 |
tgaaacatatgtggtatcatttaacttgagcac |
382 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
19221358 |
tgaatcatatgtggtatcatttaacttgagcac |
19221390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 30651126 - 30651177
Alignment:
| Q |
116 |
tactattcatggattcggttatgacaatgttagtgatgattataagattatt |
167 |
Q |
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|||| |||||||||| ||||||||| ||||||| ||||| |||||||||||| |
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| T |
30651126 |
tactcttcatggatttggttatgaccatgttagagatgactataagattatt |
30651177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 31777477 - 31777523
Alignment:
| Q |
121 |
ttcatggattcggttatgacaatgttagtgatgattataagattatt |
167 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||| |||||||||||| |
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| T |
31777477 |
ttcatggatttggttatgaccatgttagagatgactataagattatt |
31777523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 23216469 - 23216413
Alignment:
| Q |
119 |
tattcatggattcggttatgacaatgttagtgatgattataagattattcgatatgt |
175 |
Q |
| |
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|||||||||||| ||||||||| |||||| |||| |||||||| ||||||||||| |
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| T |
23216469 |
tattcatggatttggttatgaccatgttataaatgactataagatcattcgatatgt |
23216413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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