View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_16 (Length: 381)
Name: NF12356_low_16
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 33779983 - 33780300
Alignment:
| Q |
11 |
cagagacatgatcggttgctaacagcgtaattaaaccatagtcggtatgagctccagctccgaataatcctttcaagggatccgatacttgaccttcaaa |
110 |
Q |
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| T |
33779983 |
cagagacatgatcggttgctaacagcgtaattaaaccatagtcggtatgagctccagctccaaataatcctttcaagggatccgatacttgaccttcaaa |
33780082 |
T |
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| Q |
111 |
caaaaagatgaacacggctatataacttatcttcctttataactgtacaaagtacaacaaaacaccaagatcactgatccaatacctccatagtgcagca |
210 |
Q |
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| T |
33780083 |
caaaaagatgaacacggctatataacttatcttcctttataactgtacaaagtacaacaaaacaccaagatcactgatccaatacctccatagtgcagca |
33780182 |
T |
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| Q |
211 |
aacgtagagtcgcaattgactctcccagcatttccggcttatcgaaaaaatcagcatctaaatcaagcgcaagggctattatctttccaactgctttccc |
310 |
Q |
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| T |
33780183 |
aacgtagagtcgcaattgactctcccagcatttccggcttatcgaaaaaatcagcatctaaatcaagcgcaagggctattatctttccaactgctttccc |
33780282 |
T |
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| Q |
311 |
cacttctctggattccgc |
328 |
Q |
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| T |
33780283 |
cacttctctggattccgc |
33780300 |
T |
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Back To:
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 43200510 - 43200439
Alignment:
| Q |
249 |
ttatcgaaaaaatcagcatctaaatcaagcgcaagggctattatctttccaactgctttccccacttctctg |
320 |
Q |
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| T |
43200510 |
ttatcaaaaaaattagcatccaaaccaagtgcaagggctattatccttgcaagtgcttttcccacttctctg |
43200439 |
T |
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