View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_19 (Length: 375)
Name: NF12356_low_19
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 158 - 375
Target Start/End: Original strand, 46491384 - 46491601
Alignment:
| Q |
158 |
ccgaagagttcatacttgtgtattttaataaattttggtagacttcctttaatttctttaacaactcatgatatctaacacctgccaaggtaattggaag |
257 |
Q |
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| T |
46491384 |
ccgatgagttcatacttgtgtattttaataaattttggtagacttcctttaatttctttaacaactcatgatatctaacacctgccaaggtaattggaag |
46491483 |
T |
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| Q |
258 |
gatatatatagaatcagaaggaatatagtggtaaacattaaatctggttgggcacacgaacatttaatgccacactactactgcatagctctcttcggtc |
357 |
Q |
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| T |
46491484 |
gatatatatagaatcagaaggaatatagtggtaaacattaaatctggttgggcacacgaacatttaatgccacactactactgcatagctctcttcggtc |
46491583 |
T |
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| Q |
358 |
ttcactctgtgctcctcc |
375 |
Q |
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| T |
46491584 |
ttcactttgtgttcctcc |
46491601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 46491234 - 46491357
Alignment:
| Q |
18 |
gattttagcgtgccacactcgccaatagataaatagggaatttatttttcctgacaatatgatgttagtaaaatgagaatgtaggtagatgatttacctg |
117 |
Q |
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| T |
46491234 |
gattttagcgtgccacactcgccaatagataaatagggaatttatttttcctgacaatatgatgttagtaaaatgagaatgtaggtagatgatttacctg |
46491333 |
T |
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| Q |
118 |
cctttccatatgtttcctcataga |
141 |
Q |
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| T |
46491334 |
cctttccatatgtttcctcataga |
46491357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 46498700 - 46498760
Alignment:
| Q |
161 |
aagagttcatacttgtgtattttaataaattttggtagacttcctttaatttctttaacaa |
221 |
Q |
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| T |
46498700 |
aagagttcataattgtgtatgttaataatttttgacagacttcctctaatttctttaacaa |
46498760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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