View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_2 (Length: 601)
Name: NF12356_low_2
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 49771383 - 49770811
Alignment:
| Q |
18 |
tgatgaacctacaagtaaagcaaatgatccaactgtgtttagcagaccggagaatattatgtttggaatctacgtaccaaaggnnnnnnn-tattcccac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49771383 |
tgatgaacctacaagtaaagcaaatgatccaactgtgtttagcagactggagaatattatgtttggaatctacgtaccaaaggaaaaacaatattcccac |
49771284 |
T |
|
| Q |
117 |
ctttgaaaacatggatcaaatccgattacatagtaagtcaacacaacccaaataccaacttctacaaaggttataggaatcttaaggatccaagtaggca |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49771283 |
ctttcaaaacatggatcaaatccgattacatagtaagtcaacacaacccaaataccaacttctacaaaggttataggaatcttaaggatccaagtaggca |
49771184 |
T |
|
| Q |
217 |
aagaatatgcccaagcagggaaaagaagaaggtccctttgcttatagaaaactgggagtttcattatgaacatcgatagctcggagtatccattgaacat |
316 |
Q |
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| T |
49771183 |
aagaatatgcccaagcagggaaaagcagaaggtccctttgcttatagaaaactgggagtttcattatgaacatcgatagctcggagtatccattgaacat |
49771084 |
T |
|
| Q |
317 |
aattacaattagtatgaagaatagagcacccatatagatcccaccatctgtttcagtattccggtgcatctcagttcgtaggaacattgtcattgttacg |
416 |
Q |
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| T |
49771083 |
aattacaattagtatgaagaatagagcacccatatagatcccaccatctgtttcagtattccggtgcatctcagttcgtaggaacattgtcattgttacg |
49770984 |
T |
|
| Q |
417 |
atgccagtgaagatcaactgaaaacaaatgaaatcaaacatgaatctagtgtaaataacaccgatgaatgatcaagtaaggnnnnnnngatcggtttgtg |
516 |
Q |
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| T |
49770983 |
atgccagtgaagatcaactgaaaacaaatgaaatcaaacatgaatctagtgtaaataacaccgatgaatgatcaagtaaggtttttttgatcggtttgtg |
49770884 |
T |
|
| Q |
517 |
tttacctgccacatcttgaaaatatagacaaacgaattccttttcataagtaagagttctcttgatacacagg |
589 |
Q |
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| T |
49770883 |
tttacctgccacatcttgaaaatatagacaaacgaattccttttcataagtaagagttctcttgatacgcagg |
49770811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 49771500 - 49771472
Alignment:
| Q |
29 |
caagtaaagcaaatgatccaactgtgttt |
57 |
Q |
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| T |
49771500 |
caagtaaagcaaatgatccaactgtgttt |
49771472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 2885227 - 2885133
Alignment:
| Q |
172 |
caacttctacaaaggttataggaatcttaaggatccaagtaggcaaagaatatgcccaagcagggaaaagaagaaggtccctttgcttatagaaa |
266 |
Q |
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| T |
2885227 |
caacttccagaaaggtaataggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgtagaaa |
2885133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 2899293 - 2899398
Alignment:
| Q |
161 |
aacccaaataccaacttctacaaaggttataggaatcttaaggatccaagtaggcaaagaatatgcccaagcagggaaaagaagaaggtccctttgctta |
260 |
Q |
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| T |
2899293 |
aacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttg |
2899392 |
T |
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| Q |
261 |
tagaaa |
266 |
Q |
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|||||| |
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|
| T |
2899393 |
tagaaa |
2899398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 569
Target Start/End: Original strand, 3825794 - 3825829
Alignment:
| Q |
534 |
gaaaatatagacaaacgaattccttttcataagtaa |
569 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
3825794 |
gaaaatatagacaaacgagttccttttcataagtaa |
3825829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 571
Target Start/End: Original strand, 3828020 - 3828071
Alignment:
| Q |
518 |
ttacctgccacatcttgaaaatatagacaaacgaattccttttcataagtaaga |
571 |
Q |
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| T |
3828020 |
ttacctgccacatcttg-aaatatagac-aacaaaatccttttcataagtaaga |
3828071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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