View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_21 (Length: 359)
Name: NF12356_low_21
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 14756022 - 14756353
Alignment:
| Q |
16 |
catattgcataattaatacatcatggttctattagctagaaaaataatccatcgattacttcnnnnnnnnnnnnatgtttggaatcctaaatgctagaaa |
115 |
Q |
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| T |
14756022 |
catattgcataattaatacatcatggttctattagctagaaaaataatccatcgattacttctttttattttttatgtttggaatcctaaatgctagaaa |
14756121 |
T |
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| Q |
116 |
aaagaaattatagtgccgtatgacccattttggcaaagactataaggattccaacgtaattgacacaattgagcaattgaagagatatttgctcatcttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14756122 |
aaagaaattatagtgccgtatgacccattttggcaaagactataaggattccaacgtaattgacacaattgagcaattgaagagatatttgctcatcttt |
14756221 |
T |
|
| Q |
216 |
ataacgtcaatttatcttttgatttcattgtatatatagtgtccctttggcaacaaaaaaccatatgttcggttttattctaggttttcttttggggtgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14756222 |
ataacgtcaatttatcttttgatttcattgtatatatagtgtccctttggcaacaaaaaaccatatgttcggttttattctaggttttcttttggggtgt |
14756321 |
T |
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| Q |
316 |
ttggcaatattggcatgtatattgttcgtctg |
347 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14756322 |
ttggcaatattggcatgtatattgttcgtctg |
14756353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 17580604 - 17580277
Alignment:
| Q |
16 |
catattgcataattaatacatcatggttctattagctagaaaaataatccatcgattacttcnnnnnnnnnnnnatgtttggaatcctaaatgctagaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
17580604 |
catattgcataattaatacatcatggttctattagctagaaaaataatccatcggttacttctttttattttttatgtttggaatcctaaatgccagaaa |
17580505 |
T |
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| Q |
116 |
aaagaaattatagtgccgtatgacccattttggcaaagactataaggattccaacgtaattgacacaattgagcaattgaagagatatttgctcatcttt |
215 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17580504 |
aaagaaattataatgccgtatgacccgttttggcaaagactataaggattccaacgtaattgacacaattgagcaattgaagagatatttgctcatcttt |
17580405 |
T |
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| Q |
216 |
ataacgtcaatttatcttttgatttcattgtatatatagtgtccctttggcaacaaaaaaccatatgttcggttttattctaggttttcttttggggtgt |
315 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |
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| T |
17580404 |
ataacgtcaatttatcttttgatttcagtgtatatatagtgtccctttggcaacaaaaaaccatatgttgagttttattctaggttttctttcgaggtgt |
17580305 |
T |
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| Q |
316 |
ttggcaatattggcatgtatattgttcg |
343 |
Q |
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||| |||||||||||| ||||||||||| |
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| T |
17580304 |
ttgacaatattggcatatatattgttcg |
17580277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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