View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_22 (Length: 354)
Name: NF12356_low_22
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_22 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 39650919 - 39651261
Alignment:
| Q |
8 |
cagcacagatgatcagcatccaaaatgttactacttttccatacacacagaaaaataatatatgaagcttatttatatataaacctacttgtattccatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39650919 |
cagcacagatgatcagcatccaaaatgttactacttttccatacaca----aaaataatatatgaagcttatttatatataaacctacttgtattccatt |
39651014 |
T |
|
| Q |
108 |
ttcccagttgttggatccaagatcacccaacgttcgttccatttcctcagctgtcaccataaaaataacaaatttttcacataagctagctaacattcaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39651015 |
ttcccagttgttggatccaagatcacccaacgttcgttccatttcctcagctgtcaccataaaaataacaaatttttcacataagctagctaacattcaa |
39651114 |
T |
|
| Q |
208 |
gggaaaattcaaagagcgtagcattttttcctaagaacatcaaaacaagattggatactcaaaggatcacaaactatgaagcatgacagggacactaaca |
307 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39651115 |
gggaaaattcaaagagcgtagcattttatcctaagaacatcaaaacaagattggatactcaaaggatcacaaactatgaagcatgacagggacactaaca |
39651214 |
T |
|
| Q |
308 |
catcacaactgataataattcgtaaaaatgacataattcaatgtaat |
354 |
Q |
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| T |
39651215 |
catcacaactgataataattcgtaaaaatgacataattcaatgtaat |
39651261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 38749616 - 38749580
Alignment:
| Q |
318 |
gataataattcgtaaaaatgacataattcaatgtaat |
354 |
Q |
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|||||||||| | |||||||||||||||||||||||| |
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| T |
38749616 |
gataataatttgaaaaaatgacataattcaatgtaat |
38749580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 39582772 - 39582826
Alignment:
| Q |
300 |
cactaacacatcacaactgataataattcgtaaaaatgacataattcaatgtaat |
354 |
Q |
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|||| ||||||| ||||||||||||||| |||||||||||| ||||||||||| |
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| T |
39582772 |
cactgacacatcgaaactgataataattctaaaaaatgacatagttcaatgtaat |
39582826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 34958917 - 34958884
Alignment:
| Q |
321 |
aataattcgtaaaaatgacataattcaatgtaat |
354 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
34958917 |
aataattcataaaaatgacataattcaatgtaat |
34958884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 17168899 - 17168935
Alignment:
| Q |
317 |
tgataataattcgtaaaaatgacataattcaatgtaa |
353 |
Q |
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||||||||||| | ||||||||||||||||||||||| |
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| T |
17168899 |
tgataataatttgaaaaaatgacataattcaatgtaa |
17168935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 34541807 - 34541767
Alignment:
| Q |
314 |
aactgataataattcgtaaaaatgacataattcaatgtaat |
354 |
Q |
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|||||||||||||| | |||||||||| ||||||||||||| |
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| T |
34541807 |
aactgataataattagaaaaaatgacaaaattcaatgtaat |
34541767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 12704710 - 12704674
Alignment:
| Q |
318 |
gataataattcgtaaaaatgacataattcaatgtaat |
354 |
Q |
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|||||||||| | |||||||||||||||||||||||| |
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| T |
12704710 |
gataataatttgaaaaaatgacataattcaatgtaat |
12704674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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