View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_24 (Length: 329)
Name: NF12356_low_24
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 3216642 - 3216325
Alignment:
| Q |
7 |
ggacccaccaaccctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtc |
106 |
Q |
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| T |
3216642 |
ggacccaccaaccctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtc |
3216543 |
T |
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| Q |
107 |
ctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaaaaatagaagcaatagctaaacttggcaacgg |
206 |
Q |
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| T |
3216542 |
ctgattatggtacaacgtctaatgaagcaccatggattctaactgttggtgctagcacaactgatagaaaaatagaagcaatagctaaacttggcaacgg |
3216443 |
T |
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| Q |
207 |
ggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattcc |
306 |
Q |
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| T |
3216442 |
ggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattcc |
3216343 |
T |
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| Q |
307 |
attgccttctgtgctcct |
324 |
Q |
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|||||||| |||| |||| |
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| T |
3216342 |
attgccttttgtggtcct |
3216325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 3208691 - 3208386
Alignment:
| Q |
19 |
cctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtcctgattatggta |
118 |
Q |
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| T |
3208691 |
cctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggta |
3208592 |
T |
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| Q |
119 |
caacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatat |
218 |
Q |
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| T |
3208591 |
ctttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttggcgacgggacagaatatct |
3208492 |
T |
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| Q |
219 |
tggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttctgt |
318 |
Q |
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| T |
3208491 |
tggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtgatgattccattgccttttgt |
3208392 |
T |
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| Q |
319 |
gctcct |
324 |
Q |
| |
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| T |
3208391 |
ggtcct |
3208386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 3202716 - 3202422
Alignment:
| Q |
20 |
ctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtcctgattatggtac |
119 |
Q |
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||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||| |||||| | ||||||| |
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| T |
3202716 |
ctttctttgaaagtggaattgcacttggtgcatttagtgcaattcaaaagggaatttttgttagttgttctgctggaaattcaggtccttttcatggtac |
3202617 |
T |
|
| Q |
120 |
aacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatatt |
219 |
Q |
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| T |
3202616 |
attggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcttggggatgggacggaatatctc |
3202517 |
T |
|
| Q |
220 |
ggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgcctt |
314 |
Q |
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||||||||||| || ||||||||||| |||||||||||| | ||||||||||||||||||||| | |||| | ||||||| ||| ||||||||| |
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| T |
3202516 |
ggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatgcaggtgcaattaacacaagtgatgatttcattgcctt |
3202422 |
T |
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