View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_26 (Length: 324)
Name: NF12356_low_26
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 42665904 - 42666191
Alignment:
| Q |
21 |
gtaatgcatcatatggatttttgacgatatcacttttatgcccttgctagaagtttgaagattcctttgaattgttaaaccagaatcataacattctttt |
120 |
Q |
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| T |
42665904 |
gtaatgcatcatatggatttttgacgatatcacttttatgcccttgctagaagtttgaagattcctttgaattgttaaaccagaatcataacattctttt |
42666003 |
T |
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| Q |
121 |
cagctttgctagtgctataattaattcatattttgatgtttaaaacacagtgtagtgccaatggtactttattctagaatttcattttacctgtagtcta |
220 |
Q |
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| T |
42666004 |
cagctttgctagtgctataattaattcatattttgatgtttaaaacacagtgtagtgccaatggtactttattctagaatttcattttacctgtagtcta |
42666103 |
T |
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| Q |
221 |
ataacatgattatgtaaagtagtggatttttgttagagttgctgcaaacattgtgctgtaagtgtgaagatacatgcttatttgaaac |
308 |
Q |
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| T |
42666104 |
ataacatgattatgtaaagtagtggatttttgttagagttgctgcaaacattgtgctgtaagtgtgaagatacatgcttatttgaaac |
42666191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 5918470 - 5918183
Alignment:
| Q |
21 |
gtaatgcatcatatggatttttgacgatatcacttttatgcccttgctagaagtttgaagattcctttgaattgttaaaccagaatcataacattctttt |
120 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5918470 |
gtaatgtatcatatggatttttgacgatatcacttttatgcccttgctagaagtttgaagattcctttgaattgttaaaccagaatcataacattctgtt |
5918371 |
T |
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| Q |
121 |
cagctttgctagtgctataattaattcatattttgatgtttaaaacacagtgtagtgccaatggtactttattctagaatttcattttacctgtagtcta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5918370 |
cagctttgctagtgctataattaattcatattttgatgtttaaaacacagtgtagtgccaatggtactttattctagaatttcattttacctgtagtcta |
5918271 |
T |
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| Q |
221 |
ataacatgattatgtaaagtagtggatttttgttagagttgctgcaaacattgtgctgtaagtgtgaagatacatgcttatttgaaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5918270 |
ataacatgattatgtaaagtagtggatttttgttagagttgctgcaaacattgtgctgtaagtgtgaagatacatgcttatttgaaac |
5918183 |
T |
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