View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12356_low_3 (Length: 558)

Name: NF12356_low_3
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12356_low_3
NF12356_low_3
[»] chr4 (5 HSPs)
chr4 (73-541)||(42083066-42083534)
chr4 (145-541)||(42086665-42087051)
chr4 (1-52)||(42083016-42083067)
chr4 (23-120)||(42086520-42086611)
chr4 (429-529)||(29242409-29242508)
[»] chr7 (3 HSPs)
chr7 (156-207)||(22284482-22284533)
chr7 (150-196)||(37603915-37603961)
chr7 (139-203)||(3262022-3262086)
[»] chr2 (2 HSPs)
chr2 (139-194)||(6933139-6933194)
chr2 (156-201)||(18626931-18626976)
[»] chr8 (2 HSPs)
chr8 (150-196)||(30922528-30922574)
chr8 (145-196)||(8217034-8217086)
[»] chr5 (1 HSPs)
chr5 (156-192)||(19629033-19629069)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 73 - 541
Target Start/End: Original strand, 42083066 - 42083534
Alignment:
Q  73 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataataatttgaaaaa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42083066 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataataatttgaaaaa 42083165  T
Q  173 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaataattaatatctta 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42083166 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaataattaatatctta 42083265  T
Q  273 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcctcttcttctgctgag 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42083266 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgatttggcctcttcttctgctgag 42083365  T
Q  373 atcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccata 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42083366 atcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccata 42083465  T
Q  473 aaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42083466 aaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca 42083534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 145 - 541
Target Start/End: Original strand, 42086665 - 42087051
Alignment:
Q  145 acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct 244  Q
    ||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| ||    |||||||||  ||| ||||    
T  42086665 acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtcg-tgct 42086759  T
Q  245 acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac 344  Q
    ||||||||||||||| ||    | ||| |||||||||| ||| ||||||| || | ||||||||||||||| | ||||  | ||||||| |||| || ||    
T  42086760 acatagctttcaaatcat----accttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac 42086854  T
Q  345 ttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaa 444  Q
    |  |||||||||||||||||  | |||||||||||| ||||||| |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||      
T  42086855 tattgatttggcctcttcttgagttgagatcaccaattacatctcctaaatgttcttcaggagtaacaacttcaactttcattataggttcaagcattct 42086954  T
Q  445 tggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca 541  Q
     |||  ||||||||| |||||||||  |||||||   ||||||||||||||||| |||  |||||||||||| ||||||||||||| || |||||||    
T  42086955 cggtccggcttttcttattccttcccgaaaagctcctcttgctgccaactggaaagccaacacacttgaatctacatcatggtaagaaccatccaca 42087051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42083016 - 42083067
Alignment:
Q  1 acggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagca 52  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42083016 acggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagca 42083067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 42086520 - 42086611
Alignment:
Q  23 agtgtaccgacatacataaacatctcagcaatgggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta 120  Q
    ||||||| |||||||  ||||||||||||||  ||||||||||| |||||||||||||||      ||||||||||||||||||||| ||||||||||    
T  42086520 agtgtactgacatactgaaacatctcagcaagaggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta 42086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 529
Target Start/End: Complemental strand, 29242508 - 29242409
Alignment:
Q  429 taggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggta 528  Q
    ||||||||||||||   |||  ||||||||| ||||||||   |||| || | |||||||||||||| || |||  ||||||||||||||||||||||||    
T  29242508 taggttcaagcattttcggtccggcttttcttattccttcttgaaaaactcgtcttgctgccaactgaaa-gccaacacacttgaatccacatcatggta 29242410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
Q  156 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca 207  Q
    |||||||||||||||||||||| || |||||||||||| || ||||||||||    
T  22284533 gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca 22284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
Q  150 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 196  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  37603915 gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca 37603961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
Q  139 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg 203  Q
    ||||| |||||||||   ||||||||||  ||||| |||||||||||| ||||||||| ||||||    
T  3262022 actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg 3262086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
Q  139 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta 194  Q
    ||||| |||| |||| ||||| || ||||||||||||||||||||||| |||||||    
T  6933139 actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta 6933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
Q  156 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt 201  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  18626931 gataataatttgaaaactggaagaaactgaatataactacatgtgt 18626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
Q  150 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 196  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||    
T  30922528 gacaatgataataattagaaaaatgcaataaattgaatgtaactaca 30922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
Q  145 acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca 196  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||    
T  8217086 acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca 8217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
Q  156 gataataatttgaaaaatggaagaaattgaatgtaac 192  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19629033 gataatactttgaaaaatggaagtaattgaatgtaac 19629069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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