View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12356_low_32 (Length: 282)

Name: NF12356_low_32
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12356_low_32
NF12356_low_32
[»] chr5 (4 HSPs)
chr5 (14-177)||(1759966-1760136)
chr5 (59-172)||(1738973-1739080)
chr5 (109-175)||(1744360-1744426)
chr5 (129-177)||(1724448-1724496)
[»] chr3 (3 HSPs)
chr3 (109-172)||(2022788-2022851)
chr3 (109-175)||(3156968-3157034)
chr3 (123-175)||(3167250-3167302)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 1759966 - 1760136
Alignment:
Q  14 agcagcagagagcggaagaggaagagagtaagaaagttggttcat-------ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaa 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1759966 agcaacagagagcggaagaggaagagagtaagaaagttggttcatcatctggttttccaaataacaacaaagaagagaaagatgaaaattagaacaagaa 1760065  T
Q  107 caaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacagg 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1760066 caaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttactacttcacagg 1760136  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 1738973 - 1739080
Alignment:
Q  59 ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagaga 158  Q
    ||||||||||||||||||  |||||||||||||      |||||||||  | ||||||||  ||||||||||| |||||||||| |||||||||||| ||    
T  1738973 ttttccaaataacaacaataaagggaaagatga------gaacaagaatgaggagaaaaaaatggattcaaggactttttcatgcttattttgcaaggga 1739066  T
Q  159 aaatttgctacttc 172  Q
    |||||| |||||||    
T  1739067 aaattttctacttc 1739080  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 1744360 - 1744426
Alignment:
Q  109 aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca 175  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  1744360 aagagaaaaaaatggattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcaca 1744426  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 1724448 - 1724496
Alignment:
Q  129 aggtctttttcatgtttattttgcaagagaaaatttgctacttcacagg 177  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1724448 aggtctttttcatgcttattttgcaagagaaaattttctacttcacagg 1724496  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 2022788 - 2022851
Alignment:
Q  109 aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttc 172  Q
    ||||||| ||||  ||||||| ||||||||||||||  |||||||||||||||||| |||||||    
T  2022788 aagagaagaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttc 2022851  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 3157034 - 3156968
Alignment:
Q  109 aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca 175  Q
    ||||||| |||| ||||||||||||||||||||| |  ||||| |||||| ||||| ||||||||||    
T  3157034 aagagaagaattcggattcaaggtctttttcatgctccttttgtaagagacaattttctacttcaca 3156968  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 3167250 - 3167302
Alignment:
Q  123 gattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca 175  Q
    ||||||| ||||||||||||||  |||||||||||||||||| |||| |||||    
T  3167250 gattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcaca 3167302  T

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