View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_33 (Length: 280)
Name: NF12356_low_33
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 27159821 - 27159972
Alignment:
| Q |
17 |
caaaatccacatgatcttttatttccatgcataacatcttttcttcttgaaaacgacttgctctttatgatttcatgttgaccactaagcaaaaagatag |
116 |
Q |
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| T |
27159821 |
caaaatccacatgatcttttatttccatgcataacatcttttcttcttgaaaacgacttgctctttatgatttcatgttgaccactaagcaaaaagatag |
27159920 |
T |
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| Q |
117 |
ataaagaggtgcttctttttccctcgctattaaaacaaaaacaatgcaaagg |
168 |
Q |
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| T |
27159921 |
ataaagaggtgcttctttttccctcgctattaaaacaaaaacaatgcaaagg |
27159972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 27160037 - 27160077
Alignment:
| Q |
233 |
cttgaattagaaccatcattaatattagcaacacaggttct |
273 |
Q |
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| T |
27160037 |
cttgaattagaaccatcattaatattagcaacaaaggttct |
27160077 |
T |
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