View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_34 (Length: 274)
Name: NF12356_low_34
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 48357090 - 48357351
Alignment:
| Q |
1 |
atctaactagctagccatatatctatctatagtcacacacccaatattttaacatataataagtaaatacaaatcaacttgagcagattcaattggaaga |
100 |
Q |
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| T |
48357090 |
atctaactagctagccatatatctatctatagtcacacacccaatattttaacatataataagtaaatacaaatcaacttgagcagattcaattggaaga |
48357189 |
T |
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| Q |
101 |
taaaatagggcagggaaccacagcagaaattcataggggaacatggcgtggatttgatgtggcagtgaagtgcatttcacctgaattctttcgcacaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48357190 |
taaaatagggcagggaaccacagcagaaattcataggggaacatggcgtggatttgatgtggcagtgaagtgcatttcacctgaattctttcgcacaaat |
48357289 |
T |
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| Q |
201 |
gcaaacggtgttgaattctttgctcaagaggttgaaactctctcaaagcaacgccacaggtt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48357290 |
gcaaacggtgttgaattctttgctcaagaggttgaaactctctcaaagcaacgccacaggtt |
48357351 |
T |
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