View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_41 (Length: 239)
Name: NF12356_low_41
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 30890915 - 30890700
Alignment:
| Q |
5 |
tatgaatgttaaaagaattcagagagaaactaagattagttaaccaatcaacacttatatttta-gttttgtcatgtatgtttgaaatgcatattaataa |
103 |
Q |
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| T |
30890915 |
tatgaatgttaaaagaatttagagagaaactgagattaattaaccaattaacacttatattttttgttttgtcaggtatgattgaaatgcatattagtaa |
30890816 |
T |
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| Q |
104 |
tctatcatttatgtctacatcatattaatttatcatttatgtctacatctttcataaattactaatggattaatgaataattttgatctatcaaaattca |
203 |
Q |
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| T |
30890815 |
tctatcatttatgtctacatcttattaatttatcatttatgtctacatcttccataaattactaatggattaaagaataattttgatctatcaaaattca |
30890716 |
T |
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| Q |
204 |
aatccatctaacctat |
219 |
Q |
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|||||||||||||||| |
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| T |
30890715 |
aatccatctaacctat |
30890700 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 15569036 - 15568950
Alignment:
| Q |
6 |
atgaatgttaaaagaattcagagagaaactaagattagttaaccaatcaacacttatattttagttttgtcatgtatgtttgaaatg |
92 |
Q |
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||||||||||||| |||||||||||||| ||| | ||| ||||||||||||| || |||||| | | | |||||||| |||||||| |
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| T |
15569036 |
atgaatgttaaaataattcagagagaaattaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatg |
15568950 |
T |
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