View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12356_low_42 (Length: 234)
Name: NF12356_low_42
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23496118 - 23495903
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttctatttgtttgttgtaaatgttgcatctaaatgacaaacaggttagagggtcaagtagtgaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496118 |
acatgttaaatggaacaattccacgttggtgtttttctatttgtttattgtaaatgttgcatctaaatgacaaacaggttagagggtcaagtagtgaatt |
23496019 |
T |
|
| Q |
101 |
accaacatgttctttgcaatattgaatgatattttggacctttagatagaatgagatggtgaaatacatgaccatgctgaaatgaatcattatttgatat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23496018 |
accaacatgttctttgcaatattgaatgatattttggacctttagatagaatgagatggtgaaatacatgaccatgctgaaatgaatcagtatttgatat |
23495919 |
T |
|
| Q |
201 |
aggacttgtttattat |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
23495918 |
aggacttgtttattat |
23495903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37400535 - 37400572
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
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| T |
37400535 |
acatgttaaatggaacaattccacattggtgttattct |
37400572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37533537 - 37533500
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37533537 |
acatgttaaatggaacaattccacattggtgttattct |
37533500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37594761 - 37594724
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37594761 |
acatgttaaatggaacaattccacattggtgttattct |
37594724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37640309 - 37640272
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37640309 |
acatgttaaatggaacaattccacattggtgttattct |
37640272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37697224 - 37697187
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
37697224 |
acatgttaaatggaacaattccacattggtgttattct |
37697187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37703105 - 37703068
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
37703105 |
acatgttaaatggaacaattccacattggtgttattct |
37703068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37824332 - 37824295
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37824332 |
acatgttaaatggaacaattccacattggtgttattct |
37824295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14553547 - 14553510
Alignment:
| Q |
1 |
acatgttaaatggaacaattccacgttggtgtttttct |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
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|
| T |
14553547 |
acatgttaaatggaacaattccacattggtgttattct |
14553510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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