View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12356_low_43 (Length: 234)

Name: NF12356_low_43
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12356_low_43
NF12356_low_43
[»] chr4 (6 HSPs)
chr4 (102-222)||(13091472-13091592)
chr4 (102-220)||(22591590-22591708)
chr4 (102-195)||(28117507-28117600)
chr4 (102-195)||(14642890-14642983)
chr4 (118-195)||(24304426-24304503)
chr4 (118-195)||(23628212-23628289)
[»] chr6 (4 HSPs)
chr6 (102-219)||(26332687-26332804)
chr6 (102-220)||(15668610-15668734)
chr6 (102-195)||(24050587-24050680)
chr6 (108-178)||(5123137-5123206)
[»] chr1 (4 HSPs)
chr1 (102-219)||(6577490-6577607)
chr1 (123-195)||(45589011-45589083)
chr1 (102-210)||(38317054-38317162)
chr1 (111-179)||(45668574-45668642)
[»] chr8 (3 HSPs)
chr8 (102-195)||(39995950-39996043)
chr8 (102-195)||(15309743-15309836)
chr8 (102-195)||(15490112-15490205)
[»] chr7 (2 HSPs)
chr7 (102-195)||(8792066-8792159)
chr7 (102-195)||(38035960-38036053)
[»] chr5 (9 HSPs)
chr5 (102-195)||(42110051-42110144)
chr5 (102-195)||(6928943-6929036)
chr5 (102-195)||(25820641-25820734)
chr5 (102-195)||(27177088-27177181)
chr5 (102-195)||(32262333-32262426)
chr5 (102-195)||(42322242-42322335)
chr5 (102-195)||(15975868-15975961)
chr5 (118-195)||(31958997-31959074)
chr5 (118-193)||(39782341-39782416)
[»] chr2 (1 HSPs)
chr2 (102-195)||(7232391-7232484)
[»] scaffold0237 (1 HSPs)
scaffold0237 (102-195)||(6009-6102)
[»] scaffold0005 (1 HSPs)
scaffold0005 (102-195)||(174309-174402)
[»] chr3 (3 HSPs)
chr3 (102-210)||(3591736-3591844)
chr3 (102-210)||(9785947-9786055)
chr3 (118-195)||(12997406-12997483)
[»] scaffold0481 (1 HSPs)
scaffold0481 (145-195)||(6196-6246)
[»] scaffold0198 (1 HSPs)
scaffold0198 (102-195)||(15866-15966)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 13091472 - 13091592
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatgaggaatt 201  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13091472 atatgagaccatttccactaatcaaacaagaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggtgttcaagatgaggaatt 13091571  T
Q  202 caacaaatgggatcaaatcac 222  Q
    |||||||||||| ||||||||    
T  13091572 caacaaatgggaccaaatcac 13091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 22591590 - 22591708
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatgaggaatt 201  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||    
T  22591590 atatgagaccatttccactaatcaagcaagaaaagatcatagttgcaacaacaacacttcgtaacttcattcgaatatgtggcgttcaagatgaggagtt 22591689  T
Q  202 caacaaatgggatcaaatc 220  Q
    |||||||||||| ||||||    
T  22591690 caacaaatgggaccaaatc 22591708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 28117600 - 28117507
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  28117600 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 28117507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 14642890 - 14642983
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||||||| |||| || |||||||||||||| ||||| ||| |||||||    
T  14642890 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacaacactccacaactttattcgaatgtgtggagttgaagatga 14642983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 24304503 - 24304426
Alignment:
Q  118 actaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    |||| |||||||  ||||||||||||||||| ||||| |||| || |||||||||||||| ||||| ||| |||||||    
T  24304503 actattcaaacaacaaaagatcatagttgcagcaacaacactccacaactttattcgaatgtgtggagttgaagatga 24304426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 23628212 - 23628289
Alignment:
Q  118 actaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    |||| |||||||  ||||||||||||||| ||||||| |||| || |||||||||| ||| ||||| ||| |||||||    
T  23628212 actattcaaacaacaaaagatcatagttgtaacaacaacactccacaactttattcaaatgtgtggagttgaagatga 23628289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 26332804 - 26332687
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatgaggaatt 201  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26332804 atatgagaccatttccactaatcaaacaagaaaagatcatagttgcaacaacaacacttcataacttcattcgaatatgtggcgttcaagatgaggaatt 26332705  T
Q  202 caacaaatgggatcaaat 219  Q
    ||||||||||||||||||    
T  26332704 caacaaatgggatcaaat 26332687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 15668734 - 15668610
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacag------cacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||      ||| ||||||||| |||||||||||||||  |||||||||    
T  15668734 atatgagaccatttccactaatcaaacaagaaaagataatagttgtaacaacagcaacaacacgtcataacttcattcgaatatgtggcactcaagatga 15668635  T
Q  196 ggaattcaacaaatgggatcaaatc 220  Q
    ||||||||||||||| || ||||||    
T  15668634 ggaattcaacaaatgtgaccaaatc 15668610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 24050680 - 24050587
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||| ||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  24050680 atatgcgaccattttcactaatcaaacaacaaaagatcatagttacaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 24050587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 5123137 - 5123206
Alignment:
Q  108 gaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaata 178  Q
    |||||||| ||||||||||||   ||||||||||||||||||||||| | |||| |||||||||| |||||    
T  5123137 gaccattttcactaatcaaactacaaaagatcatagttgcaacaacaac-cttcgtaactttatttgaata 5123206  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 6577607 - 6577490
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatgaggaatt 201  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||    
T  6577607 atatgagaccattcccactaatcaaacaagaaaagatcatagttgcaacaatagcacttcataacttcattcgaatatgtggtgttcaagatgaggagtt 6577508  T
Q  202 caacaaatgggatcaaat 219  Q
    |||||||| ||| |||||    
T  6577507 caacaaattggaccaaat 6577490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 45589011 - 45589083
Alignment:
Q  123 tcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    |||||||  ||||||||||||||||||||||| |||| || |||||||||||||| ||||| ||| |||||||    
T  45589011 tcaaacaacaaaagatcatagttgcaacaacatcactccacaactttattcgaatgtgtggagttgaagatga 45589083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 38317162 - 38317054
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatgaggaatt 201  Q
    ||||||||| |||||||||||| ||| |  ||||||||| |||||||| |||| |||||||||| |||||  |||  |||| | || ||||||| |||||    
T  38317162 atatgagacaatttccactaatgaaataacaaaagatcaaagttgcaataacaacacttcataattttatgtgaaagtgtgacattgaagatgaagaatt 38317063  T
Q  202 caacaaatg 210  Q
     ||||||||    
T  38317062 taacaaatg 38317054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 45668574 - 45668642
Alignment:
Q  111 catttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatat 179  Q
    ||||| |||||||||||||  |||||||||||||||| |||| | ||||| ||||||| |||| |||||    
T  45668574 cattttcactaatcaaacaataaaagatcatagttgcgacaataacactttataacttaattccaatat 45668642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 39995950 - 39996043
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  39995950 atatgcgaccatttccactaatcaaacaacaaaagatcatagttgcaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 39996043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 15309743 - 15309836
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||||||||||||||| | || |  ||||||||||| ||||| ||| |||||||    
T  15309743 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacagcagtccacatttttattcgaatgtgtggagttgaagatga 15309836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 15490112 - 15490205
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||||||||||||||| | || |  ||||||||||| ||||| ||| |||||||    
T  15490112 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacagcagtccacatttttattcgaatgtgtggagttgaagatga 15490205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 8792066 - 8792159
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  8792066 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 8792159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 38035960 - 38036053
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||||||| |||| || |||||||||||||| ||||| ||| |||||||    
T  38035960 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacaacactccacaactttattcgaatgtgtggagttgaagatga 38036053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 42110051 - 42110144
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  42110051 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 42110144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 6929036 - 6928943
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||| ||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  6929036 atatgcgaccattttcactaatcaaacaacaaaagatcatagttacaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 6928943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 25820641 - 25820734
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||||| |||||| || |||||||||||||| ||||| ||| |||||||    
T  25820641 atatgtgaccattttcactaatcaaacaacaaaagatcatagttgcaacaaaagcactccacaactttattcgaatgtgtggagttgaagatga 25820734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 27177181 - 27177088
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| ||||| || |||||||||||||  |||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  27177181 atatgcgaccaatttcactaatcaaacaacaaaagatcatagttgcaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 27177088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 32262426 - 32262333
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||||||| |||| || |||||||||||||| ||||| ||| |||||||    
T  32262426 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacaacactccacaactttattcgaatgtgtggagttgaagatga 32262333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 42322242 - 42322335
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||| |||||||||| |||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  42322242 atatgcgaccattttcactaatcaaacaacaaaatatcatagttggaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 42322335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 15975868 - 15975961
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| ||||||||||| |  ||||||||||||||||||||||| |||| || |||||||||| ||| ||| | ||| |||||||    
T  15975868 atatgcgaccattttcactaatcaaataacaaaagatcatagttgcaacaacaacactccacaactttattcaaatgtgtagagttgaagatga 15975961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 31959074 - 31958997
Alignment:
Q  118 actaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||||||||||  ||| | ||||||||||||||| | |||| || |||||||||||||| ||||| ||| |||||||    
T  31959074 actaatcaaacaacaaatggtcatagttgcaacaataacactccacaactttattcgaatgtgtggagttgaagatga 31958997  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 39782341 - 39782416
Alignment:
Q  118 actaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagat 193  Q
    ||||||||||||  |||||||||||||||||||||||  | | || || ||||||||||| ||||| ||| |||||    
T  39782341 actaatcaaacaacaaaagatcatagttgcaacaacaatagtccacaattttattcgaatgtgtggagttgaagat 39782416  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 7232391 - 7232484
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  7232391 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 7232484  T

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Target: scaffold0237 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 6009 - 6102
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||||||| |||| || |||||||||||||| ||||| ||| |||||||    
T  6009 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacaacactccacaactttattcgaatgtgtggagttgaagatga 6102  T

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Target: scaffold0005 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 174402 - 174309
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||||||| |||| || |||||||||||||| ||||| ||| |||||||    
T  174402 atatgcgaccattttcactaatcaaacaacaaaagatcatagttgcaacaacaacactccacaactttattcgaatgtgtggagttgaagatga 174309  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 3591736 - 3591844
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatgaggaatt 201  Q
    ||||||||||||||||| | || |||||  |||||||||||||||||||||| ||||||||||| ||||||||||  |||||  || ||||||| |||||    
T  3591736 atatgagaccatttccattgatgaaacaacaaaagatcatagttgcaacaacggcacttcataattttattcgaaagtgtggtattgaagatgaagaatt 3591835  T
Q  202 caacaaatg 210  Q
     ||||||||    
T  3591836 taacaaatg 3591844  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 9786055 - 9785947
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatgaggaatt 201  Q
    ||||||||||||||||| | || |||||  |||||||||||||||||||||| ||||||||||| ||||||||||  |||||  || ||||||| |||||    
T  9786055 atatgagaccatttccattgatgaaacaacaaaagatcatagttgcaacaacggcacttcataattttattcgaaagtgtggtattgaagatgaagaatt 9785956  T
Q  202 caacaaatg 210  Q
     ||||||||    
T  9785955 taacaaatg 9785947  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 12997483 - 12997406
Alignment:
Q  118 actaatcaaacaggaaaagatcatagttgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||||||||||  |||| |||||||||||||||||| |||| || ||||||||| |||||||||| ||| |||||||    
T  12997483 actaatcaaacaacaaaaaatcatagttgcaacaacaacactccacaactttattagaatatgtggagttgaagatga 12997406  T

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Target: scaffold0481 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 6196 - 6246
Alignment:
Q  145 tgcaacaacagcacttcataactttattcgaatatgtggcgttcaagatga 195  Q
    ||||||||||||||| || |||||||||||||| ||||| ||| |||||||    
T  6196 tgcaacaacagcactccacaactttattcgaatgtgtggagttgaagatga 6246  T

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Target: scaffold0198 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 15966 - 15866
Alignment:
Q  102 atatgagaccatttccactaatcaaacaggaaaagatcatagttgcaa-------caacagcacttcataactttattcgaatatgtggcgttcaagatg 194  Q
    ||||| |||||||| |||||||| ||||  ||||||||||||||||||       ||||| |||| || |||||||||||||| ||||  ||||||||||    
T  15966 atatgcgaccattttcactaatcgaacaacaaaagatcatagttgcaagttgcaacaacaacactccacaactttattcgaatgtgtgaagttcaagatg 15867  T
Q  195 a 195  Q
    |    
T  15866 a 15866  T

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