View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_46 (Length: 204)
Name: NF12356_low_46
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 22921976 - 22922161
Alignment:
| Q |
1 |
aaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagtgtaacact |
100 |
Q |
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| T |
22921976 |
aaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagtgtaacact |
22922075 |
T |
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| Q |
101 |
aataagttccaatgaagaatcataatcaacccaaactaaaattgtttttccacctttaatactaatattatgaaccatatcatcat |
186 |
Q |
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| T |
22922076 |
aataagttccaatgaagaatcataatcaacccaaactaaaattggttttccacctttaatactaatattatgaaccatatcatcat |
22922161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 22933615 - 22933455
Alignment:
| Q |
1 |
aaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagtgtaacact |
100 |
Q |
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|||||||||||||||||||| |||||| ||| |||||||||| |||||| | ||| || |||||||| || ||| | |||||||| |||||||||||||| |
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| T |
22933615 |
aaccaacatacatagtatcatgaaaaataggagatagatccacatgaaaggacaagatcggttttttcggtttaattgaagttggagaaagtgtaacact |
22933516 |
T |
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| Q |
101 |
aataagttccaatgaagaatcataatcaacccaaactaaaattgtttttccacctttaata |
161 |
Q |
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| T |
22933515 |
aataagattcaatgaagaatcataatcaacccaaacaagaattggtttcccacttttaata |
22933455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 15628056 - 15628206
Alignment:
| Q |
3 |
ccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagtgtaacactaa |
102 |
Q |
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|||||||||||||||||| |||||| ||| |||||||| ||||||| | |||| | |||||||| || || | |||||||| |||||||||||||||| |
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| T |
15628056 |
ccaacatacatagtatcatgaaaaataggcgatagatcggtatgaaaggacaaagttggtttttttggttttgttgaagttggagaaagtgtaacactaa |
15628155 |
T |
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| Q |
103 |
taagttccaatgaagaatcataatcaacccaaactaaaattgtttttccac |
153 |
Q |
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||| | | |||||||||||||||||||||| ||| ||||| ||| |||| |
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| T |
15628156 |
caagatttattgaagaatcataatcaacccaagctagaattggtttcccac |
15628206 |
T |
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