View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12356_low_5 (Length: 537)

Name: NF12356_low_5
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12356_low_5
NF12356_low_5
[»] chr3 (11 HSPs)
chr3 (208-425)||(25151430-25151642)
chr3 (425-521)||(25151676-25151772)
chr3 (50-86)||(29184878-29184914)
chr3 (50-86)||(48044394-48044430)
chr3 (50-86)||(54567642-54567678)
chr3 (51-90)||(4217796-4217835)
chr3 (50-108)||(38243601-38243660)
chr3 (50-108)||(49263130-49263189)
chr3 (50-91)||(34062233-34062274)
chr3 (51-92)||(48076440-48076481)
chr3 (50-90)||(54566630-54566670)
[»] chr7 (6 HSPs)
chr7 (50-86)||(3766614-3766650)
chr7 (50-86)||(21237247-21237283)
chr7 (57-86)||(5217890-5217919)
chr7 (57-86)||(5218941-5218970)
chr7 (50-86)||(27159283-27159319)
chr7 (50-86)||(45865550-45865586)
[»] chr6 (6 HSPs)
chr6 (50-86)||(3062313-3062349)
chr6 (50-108)||(24387660-24387718)
chr6 (50-86)||(3063381-3063417)
chr6 (58-86)||(14328551-14328579)
chr6 (58-86)||(14421561-14421589)
chr6 (50-86)||(26470153-26470189)
[»] chr5 (10 HSPs)
chr5 (50-86)||(11889997-11890033)
chr5 (50-100)||(15395651-15395702)
chr5 (52-86)||(9751576-9751610)
chr5 (50-83)||(28820453-28820486)
chr5 (50-86)||(9750571-9750607)
chr5 (50-86)||(32144986-32145022)
chr5 (50-86)||(32145829-32145865)
chr5 (51-86)||(4602293-4602328)
chr5 (60-90)||(35600445-35600475)
chr5 (57-86)||(4602911-4602940)
[»] chr2 (7 HSPs)
chr2 (50-86)||(15747874-15747910)
chr2 (50-86)||(28461187-28461223)
chr2 (50-90)||(38528595-38528635)
chr2 (50-86)||(11829980-11830016)
chr2 (50-86)||(22467107-22467143)
chr2 (50-86)||(22468124-22468160)
chr2 (50-86)||(22474345-22474381)
[»] chr1 (13 HSPs)
chr1 (50-86)||(1826331-1826367)
chr1 (50-92)||(28414856-28414898)
chr1 (50-86)||(13903301-13903337)
chr1 (50-86)||(32130768-32130804)
chr1 (50-86)||(47145274-47145310)
chr1 (50-108)||(22592229-22592288)
chr1 (50-81)||(45833074-45833105)
chr1 (57-86)||(24546535-24546564)
chr1 (50-86)||(4414035-4414071)
chr1 (54-86)||(4415075-4415107)
chr1 (50-86)||(24545581-24545617)
chr1 (50-82)||(48716450-48716482)
chr1 (50-82)||(51471078-51471110)
[»] chr8 (6 HSPs)
chr8 (50-84)||(34375033-34375067)
chr8 (54-92)||(39452250-39452288)
chr8 (51-86)||(34902635-34902670)
chr8 (50-86)||(2269167-2269203)
chr8 (50-86)||(34504080-34504116)
chr8 (50-86)||(34901626-34901662)
[»] chr4 (8 HSPs)
chr4 (52-86)||(34027094-34027128)
chr4 (50-86)||(48029534-48029570)
chr4 (50-92)||(39865877-39865919)
chr4 (173-206)||(9136427-9136460)
chr4 (50-86)||(550797-550833)
chr4 (50-90)||(7515686-7515726)
chr4 (50-86)||(39865133-39865169)
chr4 (50-86)||(51162199-51162235)
[»] scaffold0725 (1 HSPs)
scaffold0725 (50-86)||(4038-4074)
[»] scaffold0095 (1 HSPs)
scaffold0095 (54-92)||(11100-11138)
[»] scaffold0250 (1 HSPs)
scaffold0250 (60-108)||(4666-4715)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 208 - 425
Target Start/End: Original strand, 25151430 - 25151642
Alignment:
Q  208 taaaagaaattatgcaggatataaataaatcttctatataacaatgtcaacgtttnnnnnnnnnnnncttaacaactttattaactctaatctccagcta 307  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||            ||||||||||||||||||||||||||| |||||    
T  25151430 taaaaaaaattatgcaggatataaaaaaatcttctatataacaatgtcaacgtttaaaaaaaaaa--cttaacaactttattaactctaatctcgagcta 25151527  T
Q  308 ccaagtgatccaagttaaaccgatgaaatacaaaacaaaactattcattcattgaactgaatcctaccatgctagaaagttaatcggtgtttgatgttct 407  Q
    ||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  25151528 ccaagtgatccaagttaaaccgatgaaattca---caaaactattcattcattgaactgaatcctaccatgctagaaagttaatcagagtttgatgttct 25151624  T
Q  408 aaaaagaatcagaaagaa 425  Q
    ||||||||||||||||||    
T  25151625 aaaaagaatcagaaagaa 25151642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 425 - 521
Target Start/End: Original strand, 25151676 - 25151772
Alignment:
Q  425 atcctcaaatgaagtgcatataaatgttcaaaaagggagaatgtgataccaattaggataatttattcaaacgaggtatcagtcatcacgattcaca 521  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25151676 atcctcaaatgaagtgcatataaatgttcaaaaagtgagaatgtgataccaattaggaaaatttattcaaacgaggtatcattcatcacgattcaca 25151772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 29184878 - 29184914
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  29184878 ggtgacgcaacatgccacatcagcaaaaatgcacagt 29184914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 48044430 - 48044394
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  48044430 ggtgacgcaacatgccacatcagcaaaaatgcacagt 48044394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 54567642 - 54567678
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||| |||||||||||||||||||||||||||    
T  54567642 ggtgacacagcatgccacatcagcaaaaatgcacagt 54567678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 4217835 - 4217796
Alignment:
Q  51 gtgacacaacatgccacatcagcaaaaatgcacagttagc 90  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  4217835 gtgacgcagcatgccacatcagcaaaaatgcacagttagc 4217796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 38243601 - 38243660
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagcat-cctaggggagtattct 108  Q
    |||||| || |||||||||| |||||||||||||||| ||||| |||||||| |||||||    
T  38243601 ggtgacgcatcatgccacataagcaaaaatgcacagtcagcatgcctaggggggtattct 38243660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 49263189 - 49263130
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagcat-cctaggggagtattct 108  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||  |||||||| ||||||    
T  49263189 ggtgacacagcatgccacatcaggaaaaatgcacagtcagcatgtctaggggaatattct 49263130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 34062233 - 34062274
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagca 91  Q
    ||||||||||| | ||||||||||||||||||||||| ||||    
T  34062233 ggtgacacaacttaccacatcagcaaaaatgcacagtcagca 34062274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 48076481 - 48076440
Alignment:
Q  51 gtgacacaacatgccacatcagcaaaaatgcacagttagcat 92  Q
    ||||| || ||||||||||||||||||||||||||| |||||    
T  48076481 gtgacgcatcatgccacatcagcaaaaatgcacagtcagcat 48076440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 54566670 - 54566630
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagc 90  Q
    ||||||||| |||||||||| |||||||||||| |||||||    
T  54566670 ggtgacacatcatgccacattagcaaaaatgcatagttagc 54566630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 3766614 - 3766650
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  3766614 ggtgacacaacatgccacatcagcaaaaatgcacagt 3766650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 21237247 - 21237283
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||| |||||||||||||||||||||||||||    
T  21237247 ggtgacacagcatgccacatcagcaaaaatgcacagt 21237283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 5217919 - 5217890
Alignment:
Q  57 caacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||||||||||||||||||||||||    
T  5217919 caacatgccacatcagcaaaaatgcacagt 5217890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 5218941 - 5218970
Alignment:
Q  57 caacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||||||||||||||||||||||||    
T  5218941 caacatgccacatcagcaaaaatgcacagt 5218970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 27159283 - 27159319
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  27159283 ggtgacgcagcatgccacatcagcaaaaatgcacagt 27159319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 45865550 - 45865586
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  45865550 ggtgacgcatcatgccacatcagcaaaaatgcacagt 45865586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 3062349 - 3062313
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  3062349 ggtgacacaacatgccacatcagcaaaaatgcacagt 3062313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 24387660 - 24387718
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagcatcctaggggagtattct 108  Q
    ||||||||| ||| ||||||||||||||||||||||| | ||| ||  |||||||||||    
T  24387660 ggtgacacagcataccacatcagcaaaaatgcacagtcaacatgcttagggagtattct 24387718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 3063381 - 3063417
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  3063381 ggtgacgcagcatgccacatcagcaaaaatgcacagt 3063417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 14328551 - 14328579
Alignment:
Q  58 aacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||    
T  14328551 aacatgccacatcagcaaaaatgcacagt 14328579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 14421561 - 14421589
Alignment:
Q  58 aacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||    
T  14421561 aacatgccacatcagcaaaaatgcacagt 14421589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 26470153 - 26470189
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  26470153 ggtgacgcagcatgccacatcagcaaaaatgcacagt 26470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 11889997 - 11890033
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  11889997 ggtgacacaacatgccacatcagcaaaaatgcacagt 11890033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 15395702 - 15395651
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagcat-cctagggg 100  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  15395702 ggtgacacagcatgccacatcagcaaaaatgcacagtcagcatgcctagggg 15395651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 9751576 - 9751610
Alignment:
Q  52 tgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||    
T  9751576 tgacacaacatgccacatcagcaaaaatgcacagt 9751610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 28820453 - 28820486
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcac 83  Q
    ||||||||||||||||||||||||||||||||||    
T  28820453 ggtgacacaacatgccacatcagcaaaaatgcac 28820486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 9750607 - 9750571
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9750607 ggtgacgcaacatgccacatcagcaaaaatgcacagt 9750571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 32145022 - 32144986
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32145022 ggtgacacagcatgccacatcagcaaaaatgcacagt 32144986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 32145829 - 32145865
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  32145829 ggtgacgcaacatgccacatcagcaaaaatgcacagt 32145865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 4602328 - 4602293
Alignment:
Q  51 gtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4602328 gtgacacaacatgtcacatcagcaaaaatgcacagt 4602293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 35600445 - 35600475
Alignment:
Q  60 catgccacatcagcaaaaatgcacagttagc 90  Q
    |||||||||||||||||||||||||||||||    
T  35600445 catgccacatcagcaaaaatgcacagttagc 35600475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 4602911 - 4602940
Alignment:
Q  57 caacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||||||||||||||||||||||||    
T  4602911 caacatgccacatcagcaaaaatgcacagt 4602940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 15747910 - 15747874
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  15747910 ggtgacacaacatgccacatcagcaaaaatgcacagt 15747874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 28461223 - 28461187
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  28461223 ggtgacacaacatgccacatcagcaaaaatgcacagt 28461187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 38528635 - 38528595
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagc 90  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  38528635 ggtgacacaacatgccacatcagcaaaaatgcacaggtagc 38528595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 11829980 - 11830016
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11829980 ggtgacgcaacatgccacatcagcaaaaatgcacagt 11830016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 22467143 - 22467107
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||| |||||||||||||||||||||||||||    
T  22467143 ggtgacacagcatgccacatcagcaaaaatgcacagt 22467107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 22468124 - 22468160
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  22468124 ggtgacgcagcatgccacatcagcaaaaatgcacagt 22468160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 22474345 - 22474381
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  22474345 ggtgacgcagcatgccacatcagcaaaaatgcacagt 22474381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 1826331 - 1826367
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  1826331 ggtgacacaacatgccacatcagcaaaaatgcacagt 1826367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 28414898 - 28414856
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagcat 92  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  28414898 ggtgacacagcatgccacatcagcaaaaatgcacagtcagcat 28414856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 13903301 - 13903337
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13903301 ggtgacgcaacatgccacatcagcaaaaatgcacagt 13903337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 32130804 - 32130768
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||| ||||||||||||||||||||||    
T  32130804 ggtgacacaacatgtcacatcagcaaaaatgcacagt 32130768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 47145310 - 47145274
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  47145310 ggtgacgcaacatgccacatcagcaaaaatgcacagt 47145274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 22592229 - 22592288
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagcat-cctaggggagtattct 108  Q
    |||||||||||||||||||| |||||||||||| ||| ||||| | |||||| |||||||    
T  22592229 ggtgacacaacatgccacataagcaaaaatgcatagtcagcatgcttaggggggtattct 22592288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 45833074 - 45833105
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgc 81  Q
    ||||||||||||||||||||||||||||||||    
T  45833074 ggtgacacaacatgccacatcagcaaaaatgc 45833105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 24546535 - 24546564
Alignment:
Q  57 caacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||||||||||||||||||||||||    
T  24546535 caacatgccacatcagcaaaaatgcacagt 24546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 4414071 - 4414035
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  4414071 ggtgacgcaacatgccacattagcaaaaatgcacagt 4414035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 4415075 - 4415107
Alignment:
Q  54 acacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||| ||||||||||||||||||||||    
T  4415075 acacaacatgtcacatcagcaaaaatgcacagt 4415107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 24545617 - 24545581
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  24545617 ggtgacgcagcatgccacatcagcaaaaatgcacagt 24545581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 48716482 - 48716450
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgca 82  Q
    |||||| ||||||||||||||||||||||||||    
T  48716482 ggtgacgcaacatgccacatcagcaaaaatgca 48716450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 51471078 - 51471110
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgca 82  Q
    ||||||||| |||||||||||||||||||||||    
T  51471078 ggtgacacagcatgccacatcagcaaaaatgca 51471110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 34375033 - 34375067
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcaca 84  Q
    |||||||||||||||||||||||||||||||||||    
T  34375033 ggtgacacaacatgccacatcagcaaaaatgcaca 34375067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 39452250 - 39452288
Alignment:
Q  54 acacaacatgccacatcagcaaaaatgcacagttagcat 92  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  39452250 acacatcatgccacatcagcaaaaatgcacagttagcat 39452288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 34902635 - 34902670
Alignment:
Q  51 gtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34902635 gtgacgcaacatgccacatcagcaaaaatgcacagt 34902670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 2269203 - 2269167
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||| |||||||||||||| |||||||||||    
T  2269203 ggtgacacaaaatgccacatcagcataaatgcacagt 2269167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 34504080 - 34504116
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||||||||||||||||||  |||||||||||    
T  34504080 ggtgacacaacatgccacatcagcggaaatgcacagt 34504116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 34901662 - 34901626
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  34901662 ggtgacgcagcatgccacatcagcaaaaatgcacagt 34901626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 34027094 - 34027128
Alignment:
Q  52 tgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||||||||||||||||||||||    
T  34027094 tgacacaacatgccacatcagcaaaaatgcacagt 34027128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 48029570 - 48029534
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||||||||||||| ||||||||||||||||||||    
T  48029570 ggtgacacaacatgcctcatcagcaaaaatgcacagt 48029534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 39865877 - 39865919
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagcat 92  Q
    ||||||||| |||| |||||||||||||||||||||| |||||    
T  39865877 ggtgacacatcatgtcacatcagcaaaaatgcacagtcagcat 39865919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 9136427 - 9136460
Alignment:
Q  173 gatctatattacaggggataaatgcttattaacc 206  Q
    ||||||||||||||||||||||||| ||||||||    
T  9136427 gatctatattacaggggataaatgcctattaacc 9136460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 550833 - 550797
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| || |||||||||||||||||||||||||||    
T  550833 ggtgacgcagcatgccacatcagcaaaaatgcacagt 550797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 7515686 - 7515726
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagttagc 90  Q
    |||||| || ||||||||||||||||||||||||| |||||    
T  7515686 ggtgacgcagcatgccacatcagcaaaaatgcacaattagc 7515726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 39865169 - 39865133
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  39865169 ggtgacacatcatgccacatcaccaaaaatgcacagt 39865133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 51162235 - 51162199
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  51162235 ggtgacgcaacatgccacatcaacaaaaatgcacagt 51162199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 4074 - 4038
Alignment:
Q  50 ggtgacacaacatgccacatcagcaaaaatgcacagt 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  4074 ggtgacgcaacatgccacatcagcaaaaatgcacagt 4038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 11100 - 11138
Alignment:
Q  54 acacaacatgccacatcagcaaaaatgcacagttagcat 92  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  11100 acacatcatgccacatcaccaaaaatgcacagttagcat 11138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 4715 - 4666
Alignment:
Q  60 catgccacatcagcaaaaatgcacagttagcat-cctaggggagtattct 108  Q
    ||||||||||||||||||||||||||| | ||| |||||||| |||||||    
T  4715 catgccacatcagcaaaaatgcacagtcaacatgcctaggggggtattct 4666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University