View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_low_6 (Length: 532)
Name: NF12356_low_6
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 522
Target Start/End: Original strand, 15442173 - 15442679
Alignment:
| Q |
16 |
cttgcttcatgtgattatgttgaggaagacattttgtttcacagttatgggttctttaactactccaaagagtgcaagtgcattatttttatggtgtttg |
115 |
Q |
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| T |
15442173 |
cttgcttcatgtgattatattgaggaagacattttgtttcacagttgtgggttctttaactactctaaagagtgtaagggtattatttttacggtgtttg |
15442272 |
T |
|
| Q |
116 |
agctactaaactaagataactaaggataaagacataaagataagattaaaatgcgtaaaatagtttgtttgattgattatgtgtcaaaataacgcataag |
215 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
15442273 |
agctactaaactaagataaataaggataaagacataaagataagactaaaatgcgtaaaataatttgtttgattgattatgtgtcaaaacaacgcataag |
15442372 |
T |
|
| Q |
216 |
ttaaaaacaaaatagcataagaatcatttatttatataagtacattcacaacaagttttacaaagagagacaactatagaacaacaataaatagacagaa |
315 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
15442373 |
ttaaaaacaaaatagcataacaatcatttatttatataagtacattcacaacaagttttacaaagagagacaactatagaacaacaatatatagatagaa |
15442472 |
T |
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| Q |
316 |
aataaatagtaaatgttaacccaaattacaaaaacattacaagtctcaaacccatctcctctaattttcatataaaatcatcagatttgatagcaactgg |
415 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
15442473 |
aataaatagtaaatgttaacccaaattacataaacactacaagtctcaaacccatctcctctagttttcatataaaatcatcagatttgatagcaattgg |
15442572 |
T |
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| Q |
416 |
tagtctcactttcccttctcttatggccaacaagtccacattatcaccatataagtaagctttcaagaatgcaaccataactcctccaacaaacgttctc |
515 |
Q |
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| T |
15442573 |
tactctcactttcccttctcttatggccaacaaatccacattatcaccatataagtaagctttcaagaatgcaaccataactcctccaacaaacgttctc |
15442672 |
T |
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| Q |
516 |
acaggtt |
522 |
Q |
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| ||||| |
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| T |
15442673 |
ataggtt |
15442679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 432 - 522
Target Start/End: Original strand, 15448478 - 15448568
Alignment:
| Q |
432 |
tctcttatggccaacaagtccacattatcaccatataagtaagctttcaagaatgcaaccataactcctccaacaaacgttctcacaggtt |
522 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
15448478 |
tctcttatagccaataagtccacattatcaccatgcaaataagctttcaagaatgcaaccataactcctccaacaaacatcctcataggtt |
15448568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 33694390 - 33694354
Alignment:
| Q |
163 |
aaaatgcgtaaaatagtttgtttgattgattatgtgt |
199 |
Q |
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| T |
33694390 |
aaaatgcgtaaaatagtttgtttgattgatcatgtgt |
33694354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 17791964 - 17792001
Alignment:
| Q |
162 |
taaaatgcgtaaaatagtttgtttgattgattatgtgt |
199 |
Q |
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| T |
17791964 |
taaaatgcgaaaaatagtttgtttgattgattgtgtgt |
17792001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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