View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12357_high_2 (Length: 376)
Name: NF12357_high_2
Description: NF12357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12357_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 46525075 - 46525414
Alignment:
| Q |
21 |
aaagggacatgacacttgattgttctttgtgtattttgtaactatcccatatagttgaaaaacgttaccattttcatttattcttagttccctaatatta |
120 |
Q |
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| T |
46525075 |
aaagggacatgacacttgattgttctttgtgtattttgtaactatcccatatagttgaaaaacgttaccattttcatttattcttagttccctaatatta |
46525174 |
T |
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| Q |
121 |
tcccatccaaaagacaaaaaacaaagacaagagatccaaaatccaattttgnnnnnnngaggccaaccaaatatagcatagtttcttagacattaccagt |
220 |
Q |
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| T |
46525175 |
tcccatccaaaagacaaaaaacaaagacaagagatccaaaatccaattttgtttttttgaggccaaccaaatatagcatagtttcttagacattaccagt |
46525274 |
T |
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| Q |
221 |
gacatttggcattaggcatatggtgcaagttgtttcatgcaacaatgtattgtacaacaatgtccggatatctaagcagagaaacaagcttcaaattttg |
320 |
Q |
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| T |
46525275 |
gacatttggcattaggcatatggtgcaagttgtttcatg---caatgtattgtacaacaatgtccggatatctaagcagagaaacaagcttcaaattttg |
46525371 |
T |
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| Q |
321 |
tttcactatgctggctagttgttgtttgcctcttgtctctgct |
363 |
Q |
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| T |
46525372 |
tttcactatgctggctagttgttgtttgcctcttgtctctgct |
46525414 |
T |
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