View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12358_high_11 (Length: 267)
Name: NF12358_high_11
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_high_11 |
 | |
|
| [»] scaffold0617 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 655573 - 655321
Alignment:
| Q |
1 |
gaagggagaagaagaaaaggtatataagctaaataaagcttcagacggactgaaacaggctccgcgagcatggtccagtcgcatagaatcctacttcgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
655573 |
gaagggagaagaagaaaaggtatataagctaaataaagctttatacggactgaaacaggctccgcgagcatggtacagtcgcatagaatcctacttcgtt |
655474 |
T |
|
| Q |
101 |
cgagagggtttcgaaaggtgtgcttctgaacatacactctttacaaaagaaaaggagggaggtaaaatcctaattgtcagtctttacgttgatgatttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655473 |
cgagagggtttcgaaaggtgtgcttctgaacatacactctttacaaaagaaaaggagagaggtaaaatcctaattgtcagtctttacgttgatgatttga |
655374 |
T |
|
| Q |
201 |
tttatactgggaatgataaaagtatttgtgaggaatttaagatgtcaatgatg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655373 |
tttatactgggaatgataaaagtatttgtgaggaatttaagatgtcaatgatg |
655321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 14246936 - 14247031
Alignment:
| Q |
158 |
ggaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgaggaatttaagatgtcaatgatg |
253 |
Q |
| |
|
||||||||| || ||||||| || ||||| ||||||||||| |||| ||| |||||||||| ||| || ||||| || ||||| | ||||||||| |
|
|
| T |
14246936 |
ggaggtaaactcttaattgtaagcctttatgttgatgatttaatttttaccgggaatgatagaagcatgtgtgatgagtttaaaaactcaatgatg |
14247031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 1046 - 964
Alignment:
| Q |
158 |
ggaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgaggaatttaa |
240 |
Q |
| |
|
||||||||| || ||||||| || ||||| ||||||||||| |||| ||| |||||||||| ||| || ||||| || ||||| |
|
|
| T |
1046 |
ggaggtaaactcttaattgtaagcctttatgttgatgatttaatttttaccgggaatgatagaagcatgtgtgatgagtttaa |
964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 6490 - 6408
Alignment:
| Q |
158 |
ggaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgaggaatttaa |
240 |
Q |
| |
|
||||||||| || ||||||| || ||||| ||||||||||| |||| ||| |||||||||| ||| || ||||| || ||||| |
|
|
| T |
6490 |
ggaggtaaactcttaattgtaagcctttatgttgatgatttaatttttaccgggaatgatagaagcatgtgtgatgagtttaa |
6408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University