View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12358_high_5 (Length: 402)
Name: NF12358_high_5
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 2844052 - 2843678
Alignment:
| Q |
18 |
actcggcggaggaagagggggagttatgattatggaaaaatggattcggttattcgttgtgatagtttccagtctgatgttgcattcagttcttgcttgc |
117 |
Q |
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| T |
2844052 |
actcggcggaggaagagggggagttatgattatggaaaaatggattcggttattcgttgtgatagtttccagtctgatgttgcattcagttcttgcttgc |
2843953 |
T |
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| Q |
118 |
cttgtgatggaagcagcagtgtgattaaagatagatcaagtcagagcatatatcttgattcagggaaagaagttaatgtgcgctgtaagtgaaaaatcat |
217 |
Q |
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| T |
2843952 |
cttgtgatggaagcagcagtgtgattaaagatagatcaagtcagagcatatatcttgattcagggaaagaagttaatgtgcactgtaagtgaaaaatcat |
2843853 |
T |
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| Q |
218 |
gtcaatcacagttattgttcttttgagtaaaatcttgttgttaatcaaatgaatagtctttgaatatatgctatattgcatacattactgtattttgtat |
317 |
Q |
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| T |
2843852 |
gtcaatcacagttattgttcttttgagtaaaatcttgttgttaatcaaatgaatagtctttgaatatatgctatattgcatacattactgtattttgtat |
2843753 |
T |
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| Q |
318 |
tcttgcaaactgcaaagctcaacaagttatgattataccgtaaatgattcctagatttcggaggggtcacaggtt |
392 |
Q |
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| T |
2843752 |
tcttgcaaactgcaaagctcaacaagttatgattataccgcaaatgattcctagatttcgaaggggtcacaggtt |
2843678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 2839828 - 2839630
Alignment:
| Q |
20 |
tcggcggaggaagagggggagttatgattatggaaaaatggattcggttattcgttgtgatagtttccagtctgat---gttgcattcagttcttgcttg |
116 |
Q |
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| T |
2839828 |
tcggcggaggaagagaggtagttatgattatggaaagaacgattcggtcattccttgtgatacttttcgatctgatgtggttgcgttctgttcttgcttg |
2839729 |
T |
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| Q |
117 |
ccttgtgatggaagcagcagtgtgattaaagatagatcaagtcagagcatatatcttgattcagggaaagaagttaatgtgcgctgtaagtgaaaaatc |
215 |
Q |
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|||| ||||||||||| || | ||| |||||||||| |||||||||||| || || ||| | ||||||||||| |||| |||||||||| ||||| |
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| T |
2839728 |
ccttatgatggaagcaacaatagtattgaagatagatccagtcagagcataattcctgcttcggagaaagaagttagtgtgaactgtaagtgacaaatc |
2839630 |
T |
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