View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12358_low_1 (Length: 644)
Name: NF12358_low_1
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 10 - 628
Target Start/End: Original strand, 37075912 - 37076528
Alignment:
| Q |
10 |
gaacctgtgcaatgtcaaaaccatgtctcttatctgtctttgtaacatttcgatgtctgaaaaacgccaaacattcattttcccaaataaactcacaagt |
109 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37075912 |
gaacttgtgcaatgttaaaaccatgtctcttatctgtctttgtaacatttcgatgtctgaaaaacgccaaacattcattttcccaaataaactcacaagt |
37076011 |
T |
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| Q |
110 |
caagaaattaggaaatattttagaatgttaaacaatataatgataattttttcaaacaatttttgtccatgaattatttagatgatacctgctaaaaaat |
209 |
Q |
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| T |
37076012 |
caagaaattaggaaatattttagaatgttaaacaatataatgataattttttcaaacaatttttgtccatgaattatttagatgatacctgctaaaaaat |
37076111 |
T |
|
| Q |
210 |
cattttaacaaatacttacaggttgccatcatagcacagatataactttcaaaagaagcctaaacttcaatgaagaagaactagaaagctnnnnnnnnga |
309 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37076112 |
cattttaacaaatacttactggttgccatcatagcacagatataactttcaaaagaagcctaaacttcaatgaagaagaactagaaagctaaaaaaaagc |
37076211 |
T |
|
| Q |
310 |
atcctccaaataaggaaatgtaataatacaatttctaaatgcaacttaaacactttctaaaccttcaaaacaaaggagtgcattaccttggtttgtgaag |
409 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
37076212 |
atcctccaaatacggaaatgtaataatacaatttctaaatgcaacttaaacactttctaaaccttcaaaacaaaggagtgc--taccttggtttgtcaag |
37076309 |
T |
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| Q |
410 |
tctagttctcccagaagcaccgcgtcggaagtggttataaactctactcaactcaccctgataatgagaagtaggggcttgtctgagagtaacaatgtac |
509 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
37076310 |
tctagttctcccagaagaaccgcgtcggaagtggttataaactctactcaactcaccctgataatgagaagtaagggcttgtttgagagtaacaatgtac |
37076409 |
T |
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| Q |
510 |
acagcagtagttgcatcaacttgacaagaagaaggtattagaagcatcccgaaaaaacacaacagtaccactaaatgtacacaatatgtgttcttctcca |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37076410 |
acagcagtagttgcatcaacttgacaagaagaaggtattagaagcatcccgaagaaacacaacagtaccactaaatgtacacaatatgtgttcttctcca |
37076509 |
T |
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| Q |
610 |
tttgagttttggaatgcaa |
628 |
Q |
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| T |
37076510 |
tttgagttttggaatgcaa |
37076528 |
T |
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