View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12358_low_11 (Length: 278)
Name: NF12358_low_11
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 30117158 - 30116915
Alignment:
| Q |
18 |
ctcatactagttgttaggattgtagagagaataaagaaaggaaaagtgaattgtgaaaagacaaggaatgtgtaaattttggtgtatgcaacaatttgtt |
117 |
Q |
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| T |
30117158 |
ctcatactagttgttaggattgtagagagaataaagaaaggaaaagtgaattgtgaaaagagaaggaatgtgtaaattttggtgtatgcaacaatttgtt |
30117059 |
T |
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| Q |
118 |
gtataccttgaacttgaactcaatagtatatatacgtgatgaactttctatatcacaaataggcggagtaccatctaacaaactcatatgacaagtgact |
217 |
Q |
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| T |
30117058 |
gtataccttgaacttgaactcaatagtatatatacgtgatgaactttctatatcacaaataggcggagtaccatctaacaaactcatatgacaagtgact |
30116959 |
T |
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| Q |
218 |
acttacattgcaagtaactactcttaaaactaactaaccaaaat |
261 |
Q |
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| T |
30116958 |
acttacattgcaagtaactactcttaaaactaactaactaaaat |
30116915 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 37629914 - 37629870
Alignment:
| Q |
34 |
ggattgtagagagaataaagaaaggaaaagtgaattgtgaaaaga |
78 |
Q |
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| T |
37629914 |
ggattgtagagagaaaagagaaaggaaaagtgaattgtgaaaaga |
37629870 |
T |
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