View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12358_low_15 (Length: 259)
Name: NF12358_low_15
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13467879 - 13468117
Alignment:
| Q |
1 |
caacaaaatccaagtagtcacttaacctatgttcatgtatgtcccttgacaattgctattttcaaaccctatcagtcagttcatatctacgtggagatca |
100 |
Q |
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| T |
13467879 |
caacaaaatccaactagtgacttaacctatgttcatgtatgtcccttgacaattgctattttcaaaccatatcagtcagttcatatttatgtggagatca |
13467978 |
T |
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| Q |
101 |
atgtgctaaaacagactaagcttcatattcggtagtagatgccacatagttataggtcctattctcatagcgggccttcattgccacgtctattccattt |
200 |
Q |
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| T |
13467979 |
atgtgccaaaacagactaagcttcatattcggtagtagatgccacatagttataggtcctattctcatagcgggccttcattgccacgtctattccattt |
13468078 |
T |
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| Q |
201 |
tcaaacattgtttccttgaaacatggcaatgatcagaat |
239 |
Q |
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| T |
13468079 |
tcaaacattgtttccttgaaacatggcaatgatcagaat |
13468117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 13472021 - 13472201
Alignment:
| Q |
46 |
ttgacaattgctattttcaaaccctatcagtcagttcatatctacgtggagatcaatgtgctaaaacagactaagcttcatattcggtagtagatgccac |
145 |
Q |
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||||||||||||||||||||| |||||||||||||||| || | |||||||||||||||| ||||||||||| || || ||| ||||||||||| || |
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| T |
13472021 |
ttgacaattgctattttcaaatcctatcagtcagttcaaatttttgtggagatcaatgtgccaaaacagactactctccacattaagtagtagatgcgac |
13472120 |
T |
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| Q |
146 |
-atagttataggtcctattctcatagcgggccttcattgccacgtctattccattttcaaacattgtttccttgaaacatg |
225 |
Q |
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| T |
13472121 |
aatagttataggtcttattctcattgttggccttcactgcagcgtctattccattttcaaacattttttccttgaaacatg |
13472201 |
T |
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