View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12358_low_17 (Length: 256)
Name: NF12358_low_17
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 1718612 - 1718389
Alignment:
| Q |
17 |
agagcaaaaaataagaaacatagataccatctgttcgaagggtataaattagccaaatacaagcatgattaaagaatacattaaacattattattgtcca |
116 |
Q |
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| T |
1718612 |
agagcaaaaaataagaaacatagataccatctgttcgaagggtataaattagccaaatacaagcatgattaaagagtacattaaacattattattgtcca |
1718513 |
T |
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| Q |
117 |
ttaacttggcaattaactaacatacagaagtgaaatgaaaaacaaaagcataaaactagaaagcatgtaaactacacaccacaaacaagttccactgcac |
216 |
Q |
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| T |
1718512 |
ttaacttggcaattaactaacatacagaagtgaaatgaaaaacaaaagcataaaactagaaagcatgtaaactacacaccacaaacaagttccactgcac |
1718413 |
T |
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| Q |
217 |
cattcttattttcttagatgttac |
240 |
Q |
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| T |
1718412 |
cattcttattttcttagatgttac |
1718389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 9066994 - 9066903
Alignment:
| Q |
17 |
agagcaaaaaataagaaacatagatacca-tctgttcgaagggtataaattagccaaatacaagcatgattaaagaatacattaaacattat |
107 |
Q |
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| T |
9066994 |
agagcaaaaaacaagaaacataaatagctgtctgttcaaagggaataaataaaccaaatacaaacatgatcaaagaatgcattaaacattat |
9066903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 14508414 - 14508475
Alignment:
| Q |
168 |
aaaactagaaagcatgtaaactacacaccacaaacaagttccactgcaccattcttattttc |
229 |
Q |
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| T |
14508414 |
aaaaatagaaagcatgtaaactactctcaacaaacaagttcctatgcaccattgttgttttc |
14508475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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