View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12358_low_2 (Length: 556)
Name: NF12358_low_2
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_low_2 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 21262265 - 21262788
Alignment:
| Q |
18 |
gatatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262265 |
gatatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgca |
21262364 |
T |
|
| Q |
118 |
gaacacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgta |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21262365 |
gaacataacttattaatatttgtgtaagacacgatttctgtttaccttaaaatacgggcagaacctattgttgttaagtatctctggaggaacttgtgta |
21262464 |
T |
|
| Q |
218 |
ccatcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21262465 |
ccatcaggttgtttcagaaatatcccctccacctctatcaaagcgtctagtactctatgaaaatgacgactaaccgtttcaccataacgtctaaagaaga |
21262564 |
T |
|
| Q |
318 |
aagacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcg |
417 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21262565 |
aagacatcacatgatttctcacattatgtcctaccatctgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcg |
21262664 |
T |
|
| Q |
418 |
atctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattt |
517 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21262665 |
atctcgtaataagatgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattacctcattt |
21262764 |
T |
|
| Q |
518 |
ttaactctctccctatgctctgtg |
541 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21262765 |
ctaactctctccctatgctctgtg |
21262788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 20030 - 20543
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
20030 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
20129 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||||| || |
|
|
| T |
20130 |
acataacttatcgaa----gtgtaagacaaact-tattcttaccttgaaatatgggtagaacctattgttgttacgtatctctggaggcacttgtgttcc |
20224 |
T |
|
| Q |
220 |
atcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaa |
319 |
Q |
| |
|
|||||||||||||| |||| | | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
20225 |
atcaggttgtttcaaaaatttgtcttccaattctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaag |
20324 |
T |
|
| Q |
320 |
gacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgat |
419 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
20325 |
gacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgat |
20424 |
T |
|
| Q |
420 |
ctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattttt |
519 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || | |
|
|
| T |
20425 |
ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcct |
20524 |
T |
|
| Q |
520 |
aactctctccctatgctct |
538 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
20525 |
aactttctctctatgctct |
20543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 22529893 - 22530406
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
22529893 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
22529992 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||||| || |
|
|
| T |
22529993 |
acataacttatcgaa----gtgtaagacaaact-tattcttaccttgaaatatgggtagaacctattgttgttacgtatctctggaggcacttgtgttcc |
22530087 |
T |
|
| Q |
220 |
atcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaa |
319 |
Q |
| |
|
|||||||||||||| |||| | | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
22530088 |
atcaggttgtttcaaaaatttgtcttccaattctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaag |
22530187 |
T |
|
| Q |
320 |
gacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgat |
419 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
22530188 |
gacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgat |
22530287 |
T |
|
| Q |
420 |
ctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattttt |
519 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || | |
|
|
| T |
22530288 |
ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcct |
22530387 |
T |
|
| Q |
520 |
aactctctccctatgctct |
538 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
22530388 |
aactttctctctatgctct |
22530406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 25992502 - 25993015
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
25992502 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
25992601 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||||||||| ||||||||| ||||| ||||||| |||||||| || |
|
|
| T |
25992602 |
acataacttatcgaa----gtgtaagacaaact-tattcttaccttgaaatatgggtagaacctgttgttgttacgtatctctggaggcacttgtgttcc |
25992696 |
T |
|
| Q |
220 |
atcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaa |
319 |
Q |
| |
|
|||||||||||||| |||| | | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
25992697 |
atcaggttgtttcaaaaatttgtcttccaattctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaag |
25992796 |
T |
|
| Q |
320 |
gacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgat |
419 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
25992797 |
gacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgat |
25992896 |
T |
|
| Q |
420 |
ctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattttt |
519 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || | |
|
|
| T |
25992897 |
ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcct |
25992996 |
T |
|
| Q |
520 |
aactctctccctatgctct |
538 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
25992997 |
aactttctctctatgctct |
25993015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 251 - 538
Target Start/End: Original strand, 22534804 - 22535091
Alignment:
| Q |
251 |
tctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaagacatcacacgatctctcacattatgtccta |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||| |||||||| ||| || |||||||| | |
|
|
| T |
22534804 |
tctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaaggacaacacacgatttctgacgttatgtccga |
22534903 |
T |
|
| Q |
351 |
ccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagc |
450 |
Q |
| |
|
| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
22534904 |
ctgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagc |
22535003 |
T |
|
| Q |
451 |
tttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcatttttaactctctccctatgctct |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || ||||| |||| ||||||||| |
|
|
| T |
22535004 |
tttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgctct |
22535091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 22533104 - 22533312
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
22533104 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
22533203 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||| ||||||||||||||| ||||| ||| ||| |||||||| || |
|
|
| T |
22533204 |
acataacttatcga----agtgtaagaca-aacttattcttaccttgaaatatgggtacaacctattgttgttacgtatctctgaaggcacttgtgttcc |
22533298 |
T |
|
| Q |
220 |
atcaggttgtttca |
233 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22533299 |
atcaggttgtttca |
22533312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 21267383 - 21267432
Alignment:
| Q |
40 |
tggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcct |
89 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
21267383 |
tggtacttttacacgaacatgtgtacaatcaattgctccaacgcagtcct |
21267432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 538
Target Start/End: Complemental strand, 20984763 - 20984250
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
20984763 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
20984664 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||||| || |
|
|
| T |
20984663 |
acataacttatcgaa----gtgtaagacaaact-tattcttaccttgaaatatgggtagaacctattgttgttacgtatctctggaggcacttgtgttcc |
20984569 |
T |
|
| Q |
220 |
atcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaa |
319 |
Q |
| |
|
|||||||||||||| |||| | | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
20984568 |
atcaggttgtttcaaaaatttgtcttccaattctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaag |
20984469 |
T |
|
| Q |
320 |
gacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgat |
419 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
20984468 |
gacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgat |
20984369 |
T |
|
| Q |
420 |
ctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattttt |
519 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || | |
|
|
| T |
20984368 |
ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcct |
20984269 |
T |
|
| Q |
520 |
aactctctccctatgctct |
538 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
20984268 |
aactttctctctatgctct |
20984250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 49366970 - 49367484
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | |||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
49366970 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacggtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
49367069 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacct-attgttgttaagtatccctggaggaacttgtgtac |
218 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||||||||| |||||||||| ||||| ||||||| |||||||| | |
|
|
| T |
49367070 |
acataacttatcgaa----gtgtaagacaaact-tattcttaccttgaaatatgggtagaaccttattgttgttacgtatctctggaggcacttgtgttc |
49367164 |
T |
|
| Q |
219 |
catcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaa |
318 |
Q |
| |
|
||||||||||||||| |||| | | |||| |||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
49367165 |
catcaggttgtttcaaaaatttgtcttccaattctatcaaagtatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaa |
49367264 |
T |
|
| Q |
319 |
agacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcga |
418 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| || |
|
|
| T |
49367265 |
ggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtga |
49367364 |
T |
|
| Q |
419 |
tctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcatttt |
518 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||| || || |
|
|
| T |
49367365 |
tctcgtaataaggtgcacaagtttacgaaagctttgggactcatacaaattatatcataacatcggtcactacctattatatgtttcattagttcgttcc |
49367464 |
T |
|
| Q |
519 |
taactctctccctatgctct |
538 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
49367465 |
taactttctctctatgctct |
49367484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 8407290 - 8407250
Alignment:
| Q |
40 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
80 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
8407290 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
8407250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 538
Target Start/End: Complemental strand, 33092673 - 33092160
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
33092673 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
33092574 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||||||||||||||||||| ||||| |||||| |||||||| || |
|
|
| T |
33092573 |
acataacttatcgaa----gtgtaagacaaact-tattcttaccttgaaatatgggtagaacctattgttgttacgtatctttggaggcacttgtgttcc |
33092479 |
T |
|
| Q |
220 |
atcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaa |
319 |
Q |
| |
|
|||||||||||||| |||| | | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
33092478 |
atcaggttgtttcaaaaatttgtcttccaattctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaag |
33092379 |
T |
|
| Q |
320 |
gacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgat |
419 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
33092378 |
gacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgat |
33092279 |
T |
|
| Q |
420 |
ctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattttt |
519 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || | |
|
|
| T |
33092278 |
ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcct |
33092179 |
T |
|
| Q |
520 |
aactctctccctatgctct |
538 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
33092178 |
aactttctctctatgctct |
33092160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 13190322 - 13190835
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
13190322 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
13190421 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| || ||||| | |||||||| | | | | ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||||| || |
|
|
| T |
13190422 |
acataatttattgaa----gtgtaagaaaaact-tattcttaccttgaaatatgggtagaacctattgttgttacgtatctctggaggcacttgtgttcc |
13190516 |
T |
|
| Q |
220 |
atcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaa |
319 |
Q |
| |
|
|||||||||||||| |||| | | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
13190517 |
atcaggttgtttcaaaaatttgtcttccaattctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaag |
13190616 |
T |
|
| Q |
320 |
gacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgat |
419 |
Q |
| |
|
|||| |||||||| ||| ||||||||||| || ||||||||||||| |||||||||||||| |||||||| |||| |||||||||||| |||||| ||| |
|
|
| T |
13190617 |
gacaacacacgatttctgacattatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcatgtatgtgtaagcccaccgtgat |
13190716 |
T |
|
| Q |
420 |
ctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattttt |
519 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || | |
|
|
| T |
13190717 |
ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcct |
13190816 |
T |
|
| Q |
520 |
aactctctccctatgctct |
538 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
13190817 |
aactttctctctatgctct |
13190835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 37504046 - 37504086
Alignment:
| Q |
40 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
80 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
37504046 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
37504086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 26248134 - 26248093
Alignment:
| Q |
40 |
tggtactttaacacgcacatgtgtacaatcaattgctccaat |
81 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
26248134 |
tggtacttttatacgaacatgtgtacaatcaattgctccaat |
26248093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 20716192 - 20716705
Alignment:
| Q |
20 |
tatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaattaacatattaaaagtgcaga |
119 |
Q |
| |
|
|||||||||||||| | || ||| ||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||||| | |||||||||| | | |
|
|
| T |
20716192 |
tatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatcccattaaaagtgtata |
20716291 |
T |
|
| Q |
120 |
acacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgttgttaagtatccctggaggaacttgtgtacc |
219 |
Q |
| |
|
||| ||||||| | |||||||||| | | | ||||||| ||||| ||||||||||||||||||||| |||| ||||||| |||||||| || |
|
|
| T |
20716292 |
acataacttatcgaa----gtgtaagacaaact-tattcttaccttgaaatatgggtagaacctattgttgttacatatctctggaggcacttgtgttcc |
20716386 |
T |
|
| Q |
220 |
atcaggttgtttcagaaatatcccctccacctctatcaaagcatctagtactctatgaaaatgacgactaaccgtttcaccagaacgtctaaagaagaaa |
319 |
Q |
| |
|
|||||||||||||| ||| || | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
20716387 |
atcaggttgtttcaaaaaaatttcttccaattctatcaaagcatctaatactctatgaaaatgacgactaattgtttcacctgagcgtctaaagaagaag |
20716486 |
T |
|
| Q |
320 |
gacatcacacgatctctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagatgcccttcgtgtatgtgtaagtccaccgcgat |
419 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
20716487 |
gacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgat |
20716586 |
T |
|
| Q |
420 |
ctcgtaataaggtgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgtttcattagctcattttt |
519 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || | |
|
|
| T |
20716587 |
ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgtttcattagttcgttcct |
20716686 |
T |
|
| Q |
520 |
aactctctccctatgctct |
538 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
20716687 |
aactttctctctatgctct |
20716705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 32038308 - 32038268
Alignment:
| Q |
40 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
80 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
32038308 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
32038268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 37569067 - 37569027
Alignment:
| Q |
40 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
80 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
37569067 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
37569027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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