View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12358_low_3 (Length: 512)
Name: NF12358_low_3
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 36602398 - 36602121
Alignment:
| Q |
7 |
ggagcacagatgaaaagacagctggctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtaga |
106 |
Q |
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| T |
36602398 |
ggagcacagatgaaaagacagctggctttctatctgagttaggagttattgctcatgttgatcatcctaataccgcaaagcttgttggatgttgtgtaga |
36602299 |
T |
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| Q |
107 |
gggagaaatgcatcttgtcttcgaattgtctacactgggaagtttaggatatgttcttcatggtttgtagatactttgaactctctcatgatgacaatca |
206 |
Q |
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| T |
36602298 |
gggagaaatgcatcttgtcttcgaattgtctacactgggaagtttaggatacgttcttcatggtttgtagatactttgaactctctcatgatgacaatca |
36602199 |
T |
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| Q |
207 |
cttttgaacttattttgtttttatatcaaatggaatgaaactcaatactcgagggtttacaaccctcgcacacatatt |
284 |
Q |
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| T |
36602198 |
cttttaaacttattttgttttcatatcaaatggaatcaaactcaatactcgagggtttacaaccctcgcacacatatt |
36602121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 285 - 501
Target Start/End: Complemental strand, 36602086 - 36601870
Alignment:
| Q |
285 |
aacatgctttcaactttaaatgtacttatagcttattccctcatgatgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
384 |
Q |
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| T |
36602086 |
aacatactttcaactttaaatgtacttatagcttattccctcatgatgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
36601987 |
T |
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| Q |
385 |
gctcttggaattgctgatggtcttctctatttgcatgagaattgtcaaaggcgaataattcatagagatattaaggcagaaaatatactactcacagaga |
484 |
Q |
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| T |
36601986 |
gctctcggaattgctgatggtcttctctatttgcatgagaattgtcaaaggcgaataattcatagagatattaaggcagaaaatatactactcacagaga |
36601887 |
T |
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| Q |
485 |
attttgatccacaggtt |
501 |
Q |
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| T |
36601886 |
attttgatccacaggtt |
36601870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 394 - 500
Target Start/End: Original strand, 47015537 - 47015643
Alignment:
| Q |
394 |
attgctgatggtcttctctatttgcatgagaattgtcaaaggcgaataattcatagagatattaaggcagaaaatatactactcacagagaattttgatc |
493 |
Q |
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| T |
47015537 |
attgctgatggactcctatatcttcatgagaattgtcaaaggcgaatcattcatagagatattaaagcagagaatgttcttctcacagagaactttgagc |
47015636 |
T |
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| Q |
494 |
cacaggt |
500 |
Q |
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| T |
47015637 |
ctcaggt |
47015643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 47014089 - 47014181
Alignment:
| Q |
32 |
ctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtagagggagaaatgcatcttgt |
124 |
Q |
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| T |
47014089 |
ctttctatctgagctaggcattattgctcatctaaaccatcctaacactgccagacttattggatgtggtgtagaaggagaaatgcaccttgt |
47014181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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