View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12358_low_5 (Length: 426)
Name: NF12358_low_5
Description: NF12358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12358_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 83 - 414
Target Start/End: Original strand, 33250136 - 33250467
Alignment:
| Q |
83 |
tagtgttctgttttcctctgtttttcaatggctctgttttcctctgtttcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcat |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250136 |
tagtgttctgttttcctctgtttttcaatggctctgttttcctctgtttcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcat |
33250235 |
T |
|
| Q |
183 |
caaaacctaataatcaccatgtaaatgactcattctctctttctttccctctaacatctcttcaaatctccacaaactccaaaacaaaaaccaaccaaca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250236 |
caaaacctaataatcaccatgtaaatgactcattctctctttctttccctctaacatctcttcaaatctccacaaactccaaaacaaaaaccaaccaaca |
33250335 |
T |
|
| Q |
283 |
attcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcccattggcacacca |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250336 |
attcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcccattggcacacca |
33250435 |
T |
|
| Q |
383 |
ccacagcttcaacaaatggttttagacacagg |
414 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33250436 |
ccacagcttcaacaaatggttttagacacagg |
33250467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 33264286 - 33264424
Alignment:
| Q |
102 |
gtttttcaatggctctgttttcctctgtttcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcatcaaaacctaataatcacc- |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| || |||| || ||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
33264286 |
gtttttcaatggctctgttttcctctgtttcactctgcatgcttgttttcttctctttctttttcttcacatgtttctcatcaaaacataataaacacca |
33264385 |
T |
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| Q |
201 |
--atgtaaatgactcattctctctttctttccctctaac |
237 |
Q |
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|||| || ||||| ||||| ||||||||||||||||| |
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| T |
33264386 |
caatgttaacgactctttctccctttctttccctctaac |
33264424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 337 - 414
Target Start/End: Original strand, 33264482 - 33264559
Alignment:
| Q |
337 |
caaatattctatggctcttgttgtgactcttcccattggcacaccaccacagcttcaacaaatggttttagacacagg |
414 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
33264482 |
caaatattctatggcccttgttgtgactcttcccattggaacaccaccacagcttcaacaaatggttttggatacagg |
33264559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 85 - 401
Target Start/End: Original strand, 50236637 - 50236950
Alignment:
| Q |
85 |
gtgttctgttttcctctgtttttcaatggctctgttttcctctgtttcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcatca |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50236637 |
gtgttctgttttcctctgtttttcaatggctctgttt----------cactgtgcatgcttcttctcttatcattctttttcttcacatgtttctcatca |
50236726 |
T |
|
| Q |
185 |
aaacctaataatcaccatgtaaatgactcattctctctttctttccctcta-------acatctcttcaaatctccacaaactccaaaacaaaaaccaac |
277 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||| |||||||||| ||||||||||| |
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| T |
50236727 |
aaacctaataatcaccatgtaaatgactcattctccctttcgttccctctagtctctaacctctcttcaaatctccataaactccaaaccaaaaaccaac |
50236826 |
T |
|
| Q |
278 |
caacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcccattggca |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50236827 |
caacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttctgactcttcccattggca |
50236926 |
T |
|
| Q |
378 |
caccaccacagcttcaacaaatgg |
401 |
Q |
| |
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|||||||||| ||||||||||||| |
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|
| T |
50236927 |
caccaccacaacttcaacaaatgg |
50236950 |
T |
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