View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12359_low_1 (Length: 930)

Name: NF12359_low_1
Description: NF12359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12359_low_1
NF12359_low_1
[»] chr7 (2 HSPs)
chr7 (12-880)||(32001340-32002208)
chr7 (756-860)||(42713587-42713689)
[»] chr4 (9 HSPs)
chr4 (753-871)||(29728744-29728862)
chr4 (753-823)||(25209789-25209858)
chr4 (753-815)||(28485771-28485832)
chr4 (753-788)||(49437752-49437787)
chr4 (759-789)||(20863763-20863793)
chr4 (756-789)||(10184754-10184787)
chr4 (753-786)||(23149866-23149899)
chr4 (765-814)||(35437736-35437785)
chr4 (759-788)||(47774069-47774098)
[»] chr2 (5 HSPs)
chr2 (753-817)||(16452163-16452225)
chr2 (753-861)||(14195140-14195244)
chr2 (753-816)||(26849188-26849247)
chr2 (766-816)||(8452537-8452586)
chr2 (753-809)||(10843148-10843205)
[»] chr3 (6 HSPs)
chr3 (753-818)||(54258426-54258487)
chr3 (753-815)||(34881077-34881135)
chr3 (753-815)||(34881352-34881410)
chr3 (759-796)||(53506222-53506259)
chr3 (753-818)||(10448010-10448071)
chr3 (759-788)||(35418065-35418094)
[»] chr8 (8 HSPs)
chr8 (753-814)||(26413398-26413458)
chr8 (753-812)||(30005749-30005806)
chr8 (753-816)||(32535467-32535528)
chr8 (753-788)||(39162257-39162292)
chr8 (768-823)||(42476976-42477030)
chr8 (753-789)||(20692885-20692921)
chr8 (753-788)||(5135252-5135287)
chr8 (753-788)||(6802063-6802098)
[»] chr1 (9 HSPs)
chr1 (763-816)||(37379294-37379345)
chr1 (766-818)||(3949977-3950030)
chr1 (753-789)||(9922205-9922241)
chr1 (758-794)||(15873796-15873832)
chr1 (753-816)||(16469221-16469285)
chr1 (773-839)||(36343089-36343153)
chr1 (753-788)||(40905823-40905858)
chr1 (754-788)||(19612233-19612267)
chr1 (759-796)||(45806172-45806209)
[»] chr5 (2 HSPs)
chr5 (758-795)||(37993615-37993652)
chr5 (759-815)||(10301392-10301446)
[»] chr6 (1 HSPs)
chr6 (753-786)||(988922-988955)


Alignment Details
Target: chr7 (Bit Score: 776; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 12 - 880
Target Start/End: Original strand, 32001340 - 32002208
Alignment:
Q  12 cctgtgcattatcttttgttaattgtatatatgttgtttttaatgatagaacaccacattttctagtaacagtcatttagtaatagctactaataagtaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001340 cctgtgcattatcttttgttaattgtatatatgttgtttttaatgatagaacaccacattttctagtaacagtcatttagtaatagctactaataagtaa 32001439  T
Q  112 aataaagttgaaatactgaaataaattaaatggggcaaagacggaatacgaaaagagtatacatatatgcattaaccattgggtgtgctttaaataaaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001440 aataaagttgaaatactgaaataaattaaatggggcaaagacggaatgcgaaaagagtatacatatatgcattaaccattgggtgtgctttaaataaaca 32001539  T
Q  212 aattttataaatagaaaagtacataaacatacctcaacagttcttagttcattaagaagagactccgatggtctggttatggtcagtgctacatgagaac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001540 aattttataaatagaaaagtacataaacatacctcaacagttcttagttcattaagaagagactccgatggtctggttatggtcagtgctacatgagaac 32001639  T
Q  312 gctgtggaacagaagggatagagtcatcataaaagtttttgtaaatgaacagcacttcaagatgaaaatcaaaaggttgcgcccaacaaaagcttacgta 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32001640 gctgtggaacagaagggatagagtcatcataaaagtttttgtaaatgaacagcacttcaagaagaaaatcaaaaggttgcgcccaacaaaagcttacgta 32001739  T
Q  412 gccatcaacaagtttctgaaggtcaagctgcacatttccaagcatccccaaaactttacctgcatacagttcataacaactgtagcaacaactaaacatg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001740 gccatcaacaagtttctgaaggtcaagctgcacatttccaagcatccccaaaactttacctgcatacagttcataacaactgtagcaacaactaaacatg 32001839  T
Q  512 atttaaatcaactagcataaaagctaggtaatttagatatggaagtgacgaaaaatttacccacttaccactctcttcatcatcatttaaggcagttttc 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32001840 atttaaatcaactagcataaaagctaggtaatttagatatggaagtgacgaaaaatttacccactcaccactctcttcatcatcatttaaggcagttttc 32001939  T
Q  612 tccaatagacaagtacccatttcttgcaatgactccgaaaattctggaatatgtatcacaacaaagataccttaagagactttaatttctcaaggcaata 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001940 tccaatagacaagtacccatttcttgcaatgactccgaaaattctggaatatgtatcacaacaaagataccttaagagactttaatttctcaaggcaata 32002039  T
Q  712 actgatcagggnnnnnnncgcatgaaaaatacannnnnnnnaatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggactt 811  Q
    ||||||||||        |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002040 actgatcaggaaaaaaaacgcatgaaaaatacattttttttaatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggactt 32002139  T
Q  812 gaacccttgaccggcaacaccttaacccgtagctgaaaccagtagagctaacaaaccccctcacacaca 880  Q
     |||||||||||| |||||||||||||| ||||| |||||||| |||||||| ||||||| | ||||||    
T  32002140 aaacccttgaccgccaacaccttaacccttagctcaaaccagttgagctaaccaacccccccccacaca 32002208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 756 - 860
Target Start/End: Complemental strand, 42713689 - 42713587
Alignment:
Q  756 ggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccgtagctgaaaccagta 855  Q
    |||||||||||||||||| |||| |||||||||  ||||||||||||||| ||||| |||||| ||||   ||| | ||||||| ||||| ||| ||||     
T  42713689 ggcaaatgttagtatgttgattgatatgttagt--tttttctccttgccaagacttaaaccctggacctctaactcgttaacccttagctcaaatcagtt 42713592  T
Q  856 gagct 860  Q
    |||||    
T  42713591 gagct 42713587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 753 - 871
Target Start/End: Original strand, 29728744 - 29728862
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccgtagctgaaacca 852  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||||||   ||||||||||||||  | |  |||| ||||||||| ||||| ||||||    
T  29728744 aatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccctgaatctccaactccttaacccttagctcaaacca 29728843  T
Q  853 gtagagctaacaaaccccc 871  Q
    || |||||| | |||||||    
T  29728844 gttgagctacccaaccccc 29728862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 753 - 823
Target Start/End: Complemental strand, 25209858 - 25209789
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgacc 823  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||||||||||  ||||||||||| ||||    
T  25209858 aatggcaaatgttagtatgttaattattatgttag-tatttttctccttgccaaaacttgaaccctggacc 25209789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 753 - 815
Target Start/End: Complemental strand, 28485832 - 28485771
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 815  Q
    |||| |||||||||||||||||||||||||||||  | |||||||||||| || |||||||||    
T  28485832 aatgacaaatgttagtatgttaattgttatgtta-atatttttctccttgtcatgacttgaac 28485771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 788
Target Start/End: Complemental strand, 49437787 - 49437752
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagt 788  Q
    |||||||||||||||||||||||||||| |||||||    
T  49437787 aatggcaaatgttagtatgttaattgttgtgttagt 49437752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 759 - 789
Target Start/End: Complemental strand, 20863793 - 20863763
Alignment:
Q  759 aaatgttagtatgttaattgttatgttagtt 789  Q
    |||||||||||||||||||||||||||||||    
T  20863793 aaatgttagtatgttaattgttatgttagtt 20863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 789
Target Start/End: Original strand, 10184754 - 10184787
Alignment:
Q  756 ggcaaatgttagtatgttaattgttatgttagtt 789  Q
    ||||||||||||||| ||||||||||||||||||    
T  10184754 ggcaaatgttagtatcttaattgttatgttagtt 10184787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 786
Target Start/End: Original strand, 23149866 - 23149899
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgtta 786  Q
    |||| |||||||||||||||||||||||||||||    
T  23149866 aatgacaaatgttagtatgttaattgttatgtta 23149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 814
Target Start/End: Complemental strand, 35437785 - 35437736
Alignment:
Q  765 tagtatgttaattgttatgttagttctttttctccttgccaggacttgaa 814  Q
    ||||||||||||||||||||||||  ||||| || |||| ||||||||||    
T  35437785 tagtatgttaattgttatgttagtattttttttcattgctaggacttgaa 35437736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 788
Target Start/End: Original strand, 47774069 - 47774098
Alignment:
Q  759 aaatgttagtatgttaattgttatgttagt 788  Q
    ||||||||||||||||||||||||||||||    
T  47774069 aaatgttagtatgttaattgttatgttagt 47774098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 753 - 817
Target Start/End: Original strand, 16452163 - 16452225
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccc 817  Q
    |||||||||||||||||||||| |||||| ||||||  ||||||||||||| |||||||||||||    
T  16452163 aatggcaaatgttagtatgttatttgttacgttagt--tttttctccttgctaggacttgaaccc 16452225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 753 - 861
Target Start/End: Original strand, 14195140 - 14195244
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccgtagctgaaacca 852  Q
    ||||| ||||||||||||||||||| | ||||||||| |||||||||   |||| |||||||| || ||||  |||| ||||||||| ||||| ||||||    
T  14195140 aatggaaaatgttagtatgttaattttcatgttagtt-tttttctcc---ccagaacttgaacactggacctccaactccttaacccttagctcaaacca 14195235  T
Q  853 gtagagcta 861  Q
    || ||||||    
T  14195236 gttgagcta 14195244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 753 - 816
Target Start/End: Original strand, 26849188 - 26849247
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 816  Q
    |||||||||| ||||||||||||||||||| ||||    ||||||||||||||| |||||||||    
T  26849188 aatggcaaatattagtatgttaattgttatattag----ttttctccttgccagcacttgaacc 26849247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 766 - 816
Target Start/End: Complemental strand, 8452586 - 8452537
Alignment:
Q  766 agtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 816  Q
    |||||||||||||||||||||| | ||||||||||| |||||| |||||||    
T  8452586 agtatgttaattgttatgttag-tatttttctccttaccaggatttgaacc 8452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 809
Target Start/End: Complemental strand, 10843205 - 10843148
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttag-ttctttttctccttgccaggac 809  Q
    ||||||||||||||||  ||||||||||||| ||| || |||||||||||| ||||||    
T  10843205 aatggcaaatgttagttggttaattgttatgctagtttttttttctccttgtcaggac 10843148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 753 - 818
Target Start/End: Complemental strand, 54258487 - 54258426
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccct 818  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||  |||||||||||||||    
T  54258487 aatggcaaatgttagtatgttaattgttatgttag----ttttctccttaacaggacttgaaccct 54258426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 815
Target Start/End: Complemental strand, 34881135 - 34881077
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 815  Q
    |||| ||||||||| ||||||||||||| ||||||    ||||||||||||||||||||||||    
T  34881135 aatgacaaatgttaatatgttaattgttttgttag----ttttctccttgccaggacttgaac 34881077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 815
Target Start/End: Complemental strand, 34881410 - 34881352
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 815  Q
    |||| ||||||||| ||||||||||||| ||||||    ||||||||||||||||||||||||    
T  34881410 aatgacaaatgttaatatgttaattgttttgttag----ttttctccttgccaggacttgaac 34881352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 796
Target Start/End: Complemental strand, 53506259 - 53506222
Alignment:
Q  759 aaatgttagtatgttaattgttatgttagttctttttc 796  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  53506259 aaatgttagtatgttaattgttatgttagttttttttc 53506222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 753 - 818
Target Start/End: Original strand, 10448010 - 10448071
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccct 818  Q
    ||||||||||| |||||||||||||||||| ||||||    || | ||||||||||||||||||||    
T  10448010 aatggcaaatgatagtatgttaattgttatattagtt----ttatacttgccaggacttgaaccct 10448071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 788
Target Start/End: Original strand, 35418065 - 35418094
Alignment:
Q  759 aaatgttagtatgttaattgttatgttagt 788  Q
    ||||||||||||||||||||||||||||||    
T  35418065 aaatgttagtatgttaattgttatgttagt 35418094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 26413398 - 26413458
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaa 814  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttagct-tttttctcctttccaagacttgaa 26413458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 753 - 812
Target Start/End: Complemental strand, 30005806 - 30005749
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttg 812  Q
    ||||| |||||||| | |||||||||||||||||||  ||||||||||||||||||||||    
T  30005806 aatggtaaatgttactttgttaattgttatgttagt--tttttctccttgccaggacttg 30005749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 753 - 816
Target Start/End: Complemental strand, 32535528 - 32535467
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 816  Q
    |||| ||||||||| ||||||||||||||||||||  ||||||||||||| || ||||||||||    
T  32535528 aatgacaaatgttaatatgttaattgttatgttag--ctttttctccttgtcaagacttgaacc 32535467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 753 - 788
Target Start/End: Complemental strand, 39162292 - 39162257
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagt 788  Q
    ||||||||||||||||||||||||||||||||||||    
T  39162292 aatggcaaatgttagtatgttaattgttatgttagt 39162257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 768 - 823
Target Start/End: Original strand, 42476976 - 42477030
Alignment:
Q  768 tatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgacc 823  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||    
T  42476976 tatgttaattgttattttagta-tttttctccttgccaggacttgaaccctggacc 42477030  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 753 - 789
Target Start/End: Complemental strand, 20692921 - 20692885
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagtt 789  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20692921 aatggcaaatgttaatatgttaattgttatgttagtt 20692885  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 788
Target Start/End: Complemental strand, 5135287 - 5135252
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagt 788  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5135287 aatggcaaatgttagtatgttaattgtaatgttagt 5135252  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 788
Target Start/End: Complemental strand, 6802098 - 6802063
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagt 788  Q
    ||||||||| ||||||||||||||||||||||||||    
T  6802098 aatggcaaacgttagtatgttaattgttatgttagt 6802063  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 816
Target Start/End: Original strand, 37379294 - 37379345
Alignment:
Q  763 gttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 816  Q
    |||| ||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  37379294 gttattatgttaattgttatattagtt--ttttctccttgccaggacttgaacc 37379345  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 818
Target Start/End: Complemental strand, 3950030 - 3949977
Alignment:
Q  766 agtatgttaattgttatgttagt-tctttttctccttgccaggacttgaaccct 818  Q
    ||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||    
T  3950030 agtatgtcaattgttatgttagtgtttttttctccttgccaagacttgaaccct 3949977  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 753 - 789
Target Start/End: Complemental strand, 9922241 - 9922205
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagtt 789  Q
    |||| ||||||||||||||||||||||||||||||||    
T  9922241 aatgacaaatgttagtatgttaattgttatgttagtt 9922205  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 794
Target Start/End: Complemental strand, 15873832 - 15873796
Alignment:
Q  758 caaatgttagtatgttaattgttatgttagttctttt 794  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15873832 caaatgttagtatgttaattgttatgttagttttttt 15873796  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 753 - 816
Target Start/End: Complemental strand, 16469285 - 16469221
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttag-ttctttttctccttgccaggacttgaacc 816  Q
    |||| ||||| |||||| ||||||||||||||||| || |||||||| |||||| ||||||||||    
T  16469285 aatgacaaatattagtaggttaattgttatgttagtttttttttctcattgccaagacttgaacc 16469221  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 839
Target Start/End: Complemental strand, 36343153 - 36343089
Alignment:
Q  773 taattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaaccc 839  Q
    |||||||||||| ||||  |||||||||||||||| |||||||||| ||||  |||| |||||||||    
T  36343153 taattgttatgtcagtt--ttttctccttgccagggcttgaaccctggaccttcaactccttaaccc 36343089  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 788
Target Start/End: Complemental strand, 40905858 - 40905823
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgttagt 788  Q
    |||| |||||||||||||||||||||||||||||||    
T  40905858 aatgacaaatgttagtatgttaattgttatgttagt 40905823  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 788
Target Start/End: Complemental strand, 19612267 - 19612233
Alignment:
Q  754 atggcaaatgttagtatgttaattgttatgttagt 788  Q
    ||||||||||| |||||||||||||||||||||||    
T  19612267 atggcaaatgtcagtatgttaattgttatgttagt 19612233  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 796
Target Start/End: Complemental strand, 45806209 - 45806172
Alignment:
Q  759 aaatgttagtatgttaattgttatgttagttctttttc 796  Q
    |||||||||||||||||||||||||||| || ||||||    
T  45806209 aaatgttagtatgttaattgttatgttaattatttttc 45806172  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Complemental strand, 37993652 - 37993615
Alignment:
Q  758 caaatgttagtatgttaattgttatgttagttcttttt 795  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37993652 caaatgttagtatgttaattgttatgttagtttttttt 37993615  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 815
Target Start/End: Original strand, 10301392 - 10301446
Alignment:
Q  759 aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 815  Q
    ||||||||||||||||||| |||||||||   |||||||||||| ||| ||||||||    
T  10301392 aaatgttagtatgttaattattatgttag--atttttctccttgtcagaacttgaac 10301446  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 786
Target Start/End: Original strand, 988922 - 988955
Alignment:
Q  753 aatggcaaatgttagtatgttaattgttatgtta 786  Q
    |||||||||||||||||| |||||||||||||||    
T  988922 aatggcaaatgttagtattttaattgttatgtta 988955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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