View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12359_low_2 (Length: 396)
Name: NF12359_low_2
Description: NF12359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12359_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 380
Target Start/End: Complemental strand, 1201439 - 1201066
Alignment:
| Q |
7 |
agaacctgtgtcttttgtagtaagactaagagattatcaacactaaccaagccaacctccaaatgtgtcaacattgaaaatacacatagatgttccggta |
106 |
Q |
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| T |
1201439 |
agaaccggtgtcttttgtagtaagaccaagagattatcaacactaatcaagccaacctccaaatgtgtcaacgttgaaaatacacatagatgttccggta |
1201340 |
T |
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| Q |
107 |
gcatcaaatcgacctggaatagatgacacaacaaaactaatttgtattgcaacagaaggatcaaaattagatatcccttgagcatacatgctacacattt |
206 |
Q |
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| T |
1201339 |
gcatcaaatcaacctggaatagatgacacaacaaaactaatttgtattgcaacagaaggatcaaaattagatatcccttgagcatacatgctacacattt |
1201240 |
T |
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| Q |
207 |
gggaacaagtatttgataaaaatatatttatttgtactacactattaaccgaccaataatctaattgatagcaatccaattataaagtattcaaagatat |
306 |
Q |
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| T |
1201239 |
gggaacaagtatttgataaaaatatatttatttgtactacactattaaccgaccaataatctaattgatagcaatcaaattataaagtattcaaagatat |
1201140 |
T |
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| Q |
307 |
tcattgttaaaaaggctaaatggtatgcttacctctgatgcctcgaattggatagactttgcatgacttaattg |
380 |
Q |
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| T |
1201139 |
tcattgttaaaaaggctaaatggtatgcttacctctgatgcctcgaattggatagactttgcatgacttaattg |
1201066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 581180 - 581092
Alignment:
| Q |
7 |
agaacctgtgtcttttgtagtaagactaagagattatcaacactaaccaagccaacctccaaatgtgtcaacattgaaaatacacatag |
95 |
Q |
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| T |
581180 |
agaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggtcaacattggaaatacacatag |
581092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 1207613 - 1207538
Alignment:
| Q |
14 |
gtgtcttttgtagtaagactaagagattatcaacactaaccaagccaacctccaaatgtgtcaacattgaaaatac |
89 |
Q |
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| T |
1207613 |
gtgtcttttgaagtaatgctaagagaatttcgacactaactaagccaacctccaaatcggtcaacattggaaatac |
1207538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 1214828 - 1214741
Alignment:
| Q |
7 |
agaacctgtgtcttttgtagtaagactaagagattatcaacactaaccaagccaacctccaaatgtgtcaacattgaaaatacacata |
94 |
Q |
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| T |
1214828 |
agaaccggtgtcttttcaagcaaggctaacagaatatcaacactaagtaagccaacatccaaatgggccaacattggaaatacacata |
1214741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 1214505 - 1214464
Alignment:
| Q |
300 |
aagatattcattgttaaaaaggctaaatggtatgcttacctc |
341 |
Q |
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| T |
1214505 |
aagatattcattgttaaaaaggctaaataatatacttacctc |
1214464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 8188760 - 8188848
Alignment:
| Q |
7 |
agaacctgtgtcttttgtagtaagactaagagattatcaacactaaccaagccaacctccaaatgtgtcaacattgaaaatacacatag |
95 |
Q |
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| T |
8188760 |
agaaccggcgtcttttgaagcaaggctaacagaatattaacactaactaaaccaacctccaaatcggtcaacattggaaatacacatag |
8188848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 8189065 - 8189131
Alignment:
| Q |
308 |
cattgttaaaaaggctaaatggtatgcttacctctgatgcctcgaattggatagactttgcatgact |
374 |
Q |
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| T |
8189065 |
cattgttaaaaaggctaacttatatgcatacctttgatacctcgaatttgatagacttcgcatgact |
8189131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 1080603 - 1080527
Alignment:
| Q |
19 |
ttttgtagtaagactaagagattatcaacactaaccaagccaacctccaaatgtgtcaacattgaaaatacacatag |
95 |
Q |
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| T |
1080603 |
ttttgaagtaaagctaagagaacatcaacactaacgaagaaaacctctaagttcgtcaacattgaaaatacacatag |
1080527 |
T |
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