View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12360_high_2 (Length: 685)
Name: NF12360_high_2
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Complemental strand, 43314570 - 43313908
Alignment:
| Q |
1 |
tgaacgagcagaacctgtgaagagtccatttaaggtacttctaaagaggaagtacaggccacaactgataataggggcgttagggattccagcattccaa |
100 |
Q |
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||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43314570 |
tgaactagcacaagctgtgaagagtccatttaaggtacttctaaagaggaagtacaggccacaactgataataggggcgttagggattccagcattccaa |
43314471 |
T |
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| Q |
101 |
cagttaacaggaaataactccattctcttctatgcacctgtcatcttccagagtttagggtttggatctaatgcagctcttttctcatcttttattacca |
200 |
Q |
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| T |
43314470 |
cagttaacaggaaataactccattctcttctatgcacctgtcatcttccagagtttagggtttggatctaatgcagctcttttctcatcttttattacca |
43314371 |
T |
|
| Q |
201 |
atggagctctccttgttgctactgtcatttcaatgtttttggttgacaagtttggcagaagaaagttcttcctagaagctggttttgaaatgatatgctg |
300 |
Q |
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| T |
43314370 |
atggagctctccttgttgctactgtcatttcaatgtttttggttgacaagtttggcagaagaaagttcttcctagaagctggttttgaaatgatatgctg |
43314271 |
T |
|
| Q |
301 |
catggtaaacactaaacactatctgtttgtttattattcttatgttatgtttcatgcaacaaattcaataataaatatagattaaatttgataa------ |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43314270 |
catggtaaacactaaacactatctgtttgtttattattcttatgttatgtttcatgcaacaaattcaataataaatatagattaaatttgataaataaat |
43314171 |
T |
|
| Q |
395 |
atagacaacatannnnnnnnatggtagataatattaaagtcaaatatttctcatgatccaatgatcattattaactgacatagtaatagatcttaacatt |
494 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43314170 |
atagacaacatattttttttatggtagataatattaaagtcaaatatttctcctgatccaatgatcattattaactgacattgtaatagatcttaacatt |
43314071 |
T |
|
| Q |
495 |
gtcagtgcatataaactaaatcatatcataataagttataaccattgttaattagcttaattgtttgtttgactttacgattgatatgcagattattact |
594 |
Q |
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| T |
43314070 |
gtcagtgcatataaactaaatcatatcataataagttataaccattgttaattagcttaattgtttgtttgactttacgattgatatgcagattattact |
43313971 |
T |
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| Q |
595 |
gctgtggttttggcggtagagttcggacattgcaaagaactttcaaaaggcataagtgcattt |
657 |
Q |
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| T |
43313970 |
gctgtggttttggcggtagagttcggacatggcaaagaactttcaaaaggcataagtgcattt |
43313908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 43380352 - 43380408
Alignment:
| Q |
86 |
attccagcattccaacagttaacaggaaataactccattctcttctatgcacctgtc |
142 |
Q |
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||||| ||||||||||| | || ||||| |||||||| |||||||||||||||||| |
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| T |
43380352 |
attcctgcattccaacaactgactggaaacaactccatcctcttctatgcacctgtc |
43380408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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