View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12360_high_7 (Length: 349)
Name: NF12360_high_7
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 43760129 - 43760459
Alignment:
| Q |
1 |
gatgatgaagatatgatattatggtttctgaaagatcgcaaatttgatgttgaagaagctgtttctaagttgactaaagccattgtatccttcttcttat |
100 |
Q |
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| T |
43760129 |
gatgatgaagatatgatattatggtttctgaaagatcgcaaatttgatgttgaagaagctgtttccaagttgactaaagccattgtatccttcttcttat |
43760228 |
T |
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| Q |
101 |
cataattatagcatcattaattttcaatttgttttttagtaatttagagtttgctttattgaggaggtggaactgggaaatgagtgaaaatcggtgtatt |
200 |
Q |
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| T |
43760229 |
cataattatagcatcattaattttcaatttgtttattagtaatttagagtttgctttattgaggaggtggaactgggaaatgagtgaaaatcggtgtatt |
43760328 |
T |
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| Q |
201 |
ctagtttctgctttcatgtgctatcatctatgtagcatctatatttaagaccgaaggcatgtccaatgtttgtggttaagtgtctcacattggatgagat |
300 |
Q |
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| T |
43760329 |
ctagtttctgctttcatgtgctatcatctatgtagcatctatatttaagacccaaggcatgtccaatgtttgtggttaagtgtctcacattggatgagat |
43760428 |
T |
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| Q |
301 |
aaagactaaatatatgtttattagtgagggc |
331 |
Q |
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| T |
43760429 |
aaagactaaatatatatttataagtgagggc |
43760459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 43755472 - 43755599
Alignment:
| Q |
1 |
gatgatgaagatatgatattatggtttctgaaagatcgcaaatttgatgttgaagaagctgtttctaagttgactaaagccattgtatccttcttcttat |
100 |
Q |
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||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |
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| T |
43755472 |
gatgacgaagatatgatacaatggtttctgaaagatcgcaagtttgatgttgaagaagctgtttcgaagttgactaaagccattgtatccttcttttcat |
43755571 |
T |
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| Q |
101 |
cataattatagcatcattaattttcaat |
128 |
Q |
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| T |
43755572 |
catatttatatgatcattcattttcaat |
43755599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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