View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12360_low_12 (Length: 289)
Name: NF12360_low_12
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 28495621 - 28495357
Alignment:
| Q |
20 |
tatggagcaacaaaggccaagtttatcactttggttaaaccaagggaatcatgaaatgggacaaagttctaattccctttatggttcttctggtttatct |
119 |
Q |
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| T |
28495621 |
tatggagcaacaaaggccaagtttatcactttggttaaaccaagggaatcatgaaatgggacaaagttctaattccctttttggttcttctggtttatct |
28495522 |
T |
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| Q |
120 |
gagatagttcaaatgggaaatgctactactaataataataa---taatgccttgatttgttcttcttcatcatcaatatttggtatacctgcttcaaatt |
216 |
Q |
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| T |
28495521 |
gagatagttcaaatgggaaatgctgctactaataataataataataatgccttgatttgttcttcttcatcatcaatgtttggtatacctgcttcaaatt |
28495422 |
T |
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| Q |
217 |
caacatctgctgcaaatctttctctatcaaaacctgcttcttccggttctgttactgtctctgct |
281 |
Q |
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| T |
28495421 |
caacatctgctgcaaatctttctctatcaaaacctgcttcttccggttctgttactgtttctgct |
28495357 |
T |
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