View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12360_low_16 (Length: 232)
Name: NF12360_low_16
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 45945560 - 45945752
Alignment:
| Q |
11 |
aagcagagatataataaaaaagacattttactcaaagacatgtacctcaaagatacgtagtttggagtaattgatgacatcatatgccatagcaaattcg |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45945560 |
aagcaaagatataataaaaaagacattttactcaaagacatgtacctcgaagatacgtagtttggagtaattgatgacataatatgccatagcaaattcg |
45945659 |
T |
|
| Q |
111 |
gtttggttggctggagggtacacaggatcaatctccttaacaaagcaaccttgtgaaacaaggatcttacgatgttcctcgggaacatcaggt |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
45945660 |
gtttggttggctggagggtacacaggagcaatctccttaacaatgcaaccttgtgaaacaaggatcttacgatgttcttcaggaacatcaggt |
45945752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 55221583 - 55221483
Alignment:
| Q |
63 |
atacgtagtttggagtaattgatgacatcatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaaagcaacctt |
162 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| || |||||||| ||||| ||||||| |||||| |||||||| |
|
|
| T |
55221583 |
atacgtagtttggagtagttgatgacataataagccatagcaaattgggtttgattcttaggagggtaaacaggtgcaatctctctaacaatgcaacctt |
55221484 |
T |
|
| Q |
163 |
g |
163 |
Q |
| |
|
| |
|
|
| T |
55221483 |
g |
55221483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University