View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12360_low_3 (Length: 504)
Name: NF12360_low_3
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 7560242 - 7559880
Alignment:
| Q |
1 |
taaacactatcaattcagtagttttaacaatatactaaacactgcatccgacggagtaaacaaattcaaatatagttcaagacatctgttttgaagaatg |
100 |
Q |
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| T |
7560242 |
taaacactatcaattcagtagttttaacaatatagtaaacactgcatccgacggagtaaacaaattcaaatatatttcaagacatctgttttgaagaatg |
7560143 |
T |
|
| Q |
101 |
taaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaatcaaatgaatcacaatacttctat |
197 |
Q |
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| T |
7560142 |
taaggttttcagaagctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaatcaaatgaatcacaatacttctat |
7560043 |
T |
|
| Q |
198 |
gaaaaacataacatcgatgttaatttcacttataagataaagtaaattatatctaactattaaggaatgatgaaaaattgtgaagatgtccacaactgaa |
297 |
Q |
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| T |
7560042 |
gaaaaacataacatcgatgttaatttcacttataagataaagtaaattatatctaactattaaggaatgatgaaaaattgtg-agatgtccacaactgaa |
7559944 |
T |
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| Q |
298 |
gaagaaaataggagactgatggctatgcaggagttccatagaggagagactatagttaatttgc |
361 |
Q |
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| T |
7559943 |
gaagaaaataggagactgatggctatgcaggagttccatagaggagagactatagttaatttgc |
7559880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 386 - 483
Target Start/End: Complemental strand, 7559885 - 7559788
Alignment:
| Q |
386 |
atttgctccagttttgcaagttggtacatgttggttggctttcataacaattaaattgtgattgaatcaccatttttgtctctgaaattgaaggtcat |
483 |
Q |
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| T |
7559885 |
atttgctccagttttgcaagttggtacatattggttggctttcataacaattaaattgtgattgaatcaccatttttgtctctgaaattgaaggtcat |
7559788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 1739817 - 1739704
Alignment:
| Q |
78 |
caagacatctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaat |
174 |
Q |
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||||| ||||| |||||||| ||||||||| |||| || | || | |||||||||||||||||||||| || |||||||||| |||||||||| | | |
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| T |
1739817 |
caagatatctgctttgaagagtgtaaggttctcagaagctttttccagtttcagcaagtgttcatatttcggactacctgcagttgtcagacatacactt |
1739718 |
T |
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| Q |
175 |
caaatgaatcacaa |
188 |
Q |
| |
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| T |
1739717 |
caaatgaatcacaa |
1739704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 2010471 - 2010565
Alignment:
| Q |
78 |
caagacatctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacata |
169 |
Q |
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||||| ||||| |||||||| ||||||||| |||| || | || | ||||||||||||||||||||| || |||||||||| |||||||||| |
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| T |
2010471 |
caagatatctgctttgaagagtgtaaggttctcagaagctttttccagtttcagcaagtgttcatattttggactacctgcagttgtcagacata |
2010565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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