View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12360_low_4 (Length: 485)
Name: NF12360_low_4
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 30544802 - 30544480
Alignment:
| Q |
18 |
tgttttgtcctcaaattataaattcctctataaatttgaatggaaaaatcttgtttataaaataaagtataatacgatgttgtattgaccatataacacc |
117 |
Q |
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| T |
30544802 |
tgttttgtcctcaaattataagttgctctataaatttgtatggaaaaatcttgtttataaaataaagtataatacgatgttgtattgaccatataacacc |
30544703 |
T |
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| Q |
118 |
aacttagaaattaggtgatagactcatcattcatttcaaattagatgatatacttcatttataaacataaaaaataatacaaataatacgatgttttttc |
217 |
Q |
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| T |
30544702 |
aacttagaaattaggtgatagactcatcattcatttcaaattagatgatatacttcatttataaacataaaaaataatacaaataatacgatgttttttc |
30544603 |
T |
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| Q |
218 |
gtatgtttataagtctttctatagatttatatcatagtatttgtatgcannnnnnnnnnnnnatatttataaatgaagtataatacgatattatatttga |
317 |
Q |
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| T |
30544602 |
gtatgtttataagtccttctatagatttgtatcatattatttgtatgca-------ttttttatgtttataaatgaagtaaaatacgatattatatttga |
30544510 |
T |
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| Q |
318 |
tgtactctatctatcagtttgaatgaatacatat |
351 |
Q |
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| T |
30544509 |
tgtac----tttatcaatttgaatgaatacatat |
30544480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 397 - 468
Target Start/End: Complemental strand, 30544436 - 30544365
Alignment:
| Q |
397 |
gatgatgacagttttgcccctaacataagaacatattaccgagaacaccccttatcaagcgaactaaaacct |
468 |
Q |
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| T |
30544436 |
gatgatgacagttttgcccctaacataagaacatattaccgagaacaccccttatcaagcgaactaaaacct |
30544365 |
T |
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