View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12360_low_5 (Length: 479)
Name: NF12360_low_5
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 41704156 - 41704623
Alignment:
| Q |
1 |
atatactcatagatcatcaaaggctgctcagattccacacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcat |
100 |
Q |
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| T |
41704156 |
atatactcatagatcatcaaaggctgctcagattccacacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcat |
41704255 |
T |
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| Q |
101 |
taagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagcc |
200 |
Q |
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| T |
41704256 |
taagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagcc |
41704355 |
T |
|
| Q |
201 |
accacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704356 |
accacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgat |
41704455 |
T |
|
| Q |
301 |
ttcagcacaatttctctttccttggcctgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaatgnnnnnnnng |
400 |
Q |
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| T |
41704456 |
ttcagcacaatttctctttccttggcctgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaatgaaaaaaaag |
41704555 |
T |
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| Q |
401 |
caataaccactattgagacaaccaagctggttttccatttggattctctcttgtaccttacacaggtt |
468 |
Q |
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| T |
41704556 |
caataaccactattgaaacaaccaagctggttttccatttggattctctcttgtaccttacacaggtt |
41704623 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 1440620 - 1440672
Alignment:
| Q |
291 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctccctgtagt |
343 |
Q |
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|||||||| |||||||| |||||||||||| |||| ||||| ||||| ||||| |
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| T |
1440620 |
agtgcttggtttcagcagaatttctctttctttggtctgctactcccggtagt |
1440672 |
T |
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