View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12360_low_9 (Length: 307)
Name: NF12360_low_9
Description: NF12360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12360_low_9 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 6603106 - 6602800
Alignment:
| Q |
1 |
cctgtcatcaaacaatacacttaatctgtccaccaccctttgaacctgaccaagccatggccctttaattacgcaatcaccttccgaggtggaatgaatc |
100 |
Q |
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| T |
6603106 |
cctgtcatcaaacaatacacttaatctgtccaccaccctttgaacctgaccaagccatggccctttaattacgcaatcaccttccgaggtggaatgaatc |
6603007 |
T |
|
| Q |
101 |
ttcagaagtttcttggagttcacattttttaatacatttccttgaatgttttccaaatccacaaacatgtcaacacttacgaccctccccatctgtccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6603006 |
ttcagaagtttcttggagttcacattttttaatacatttccttgaatgttttccaaatccacaaacatgtcaacacttacgaccctccccatctgtccag |
6602907 |
T |
|
| Q |
201 |
acgggtgtgacagggagcacacgacatcgccgtaagcaaatgttctctcgaatgaaaggaaatcatttatcctaccgatgcttcctctaaacttgataat |
300 |
Q |
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| T |
6602906 |
acgggtgtgacagggagcacacgacatcgccgtaagcaaatgttctctcgaatgaaaggaaatcatttatcctaccgatgcttcctctaaacttgataat |
6602807 |
T |
|
| Q |
301 |
atgctct |
307 |
Q |
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||||||| |
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| T |
6602806 |
atgctct |
6602800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 35440292 - 35439996
Alignment:
| Q |
8 |
tcaaacaatacacttaatctgtccaccaccctttgaacctgaccaagccatggccctttaattacgcaatcaccttccgaggtggaatgaatcttcagaa |
107 |
Q |
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| T |
35440292 |
tcaaacaatacagtaactttgtccacaaccctttgagcccgaccgagccatggccccttagttacataatcgccttctgaaatggaccgaatcttcgaaa |
35440193 |
T |
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| Q |
108 |
gtttcttggagttcacattttttaatacatttccttgaatgttttccaaatccacaaacatgtcaacacttacgaccctccccatctgtccagacgggtg |
207 |
Q |
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| T |
35440192 |
gtttgtccgagtttacattttttagtaactttcctttctcattctccaagtccacaaacaaatcaacacttgtcacccttcccatctgtccagttggatc |
35440093 |
T |
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| Q |
208 |
tgacagggagcacacgacatcgccgtaagcaaatgttctctcgaatgaaaggaaatcatttatcctaccgatgc-ttcctctaaacttgataatatg |
303 |
Q |
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| T |
35440092 |
tgacacggagcagaccacatcaccatgaacaaaagttctctcaaatgagagaaaatcatcaatcttcccaatgctttcctctaaacttgataatatg |
35439996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 3700442 - 3700746
Alignment:
| Q |
4 |
gtcatcaaacaatacacttaatctgtccaccaccctttgaacctgaccaagccatggccctttaattacgcaatcaccttccgaggtggaatgaatcttc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
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| T |
3700442 |
gtcatcaaacaatacacttaatctgtccaccaccctttgaacctgaccaagccacggaccgttaattacgcaatcaccttccgaaatggaacgaatcttc |
3700541 |
T |
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| Q |
104 |
agaagtttcttggagttcacattttttaatacatttccttgaatgttttccaaatccacaaacatgtcaacacttacgaccctccccatctgtccagacg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |
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| T |
3700542 |
agaagtttcttggagttcacattttttaatacatttccttgaatgttttccaaatccactaacacgtcaacacttacgaccctccccatctgtccagatg |
3700641 |
T |
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| Q |
204 |
ggtgtgacagggagcacacgacatcgccgtaagcaaatgttctctcgaatgaaaggaaatcatttatcctaccgatgc-ttcctctaaacttgataatat |
302 |
Q |
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||| ||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3700642 |
ggtctgacaaggagcacacaacatcgccgtatgcaaatgttctctcgaatgagaggaaatcatttatcctaccgatgctttcctctaaacttgataatat |
3700741 |
T |
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| Q |
303 |
gctct |
307 |
Q |
| |
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||||| |
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| T |
3700742 |
gctct |
3700746 |
T |
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