View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12361_high_6 (Length: 242)
Name: NF12361_high_6
Description: NF12361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12361_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 37188450 - 37188683
Alignment:
| Q |
2 |
gcaccggcactgcctatgatgtaagcacatattcaaatattcatccttg-acgttataatatttttatctaattggaatctttatgctcaatcaattcag |
100 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
37188450 |
gcaccgtcactgcctattatgtaagcacatattcaaatattcatccttttactttataatatttttaactaattggaatctttatgctcaattaattcag |
37188549 |
T |
|
| Q |
101 |
ctatcatcaaaaggtggtgcatgggatgaaattgactttgaattcttgggaaacttgagtggtgaaccatacattcttcacgccaatgtgtttagccaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
37188550 |
ctatcatcaaaaggtggtgcatgggatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaag |
37188649 |
T |
|
| Q |
201 |
gaaaaggtaacagagagcaacaattctacctatg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
37188650 |
gaaaaggtaacagagagcaacaattctacctatg |
37188683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 53498908 - 53499045
Alignment:
| Q |
94 |
aattcagctatcatcaaaaggtggtgcatgggatgaaattgactttgaattcttgggaaacttgagtggtgaaccatacattcttcacgccaatgtgttt |
193 |
Q |
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||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||||| ||||||||||| |
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| T |
53498908 |
aattcagctgtcatcaaaaggaggtgcatgggatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgttt |
53499007 |
T |
|
| Q |
194 |
agccaaggaaaaggtaacagagagcaacaattctacct |
231 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| |
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| T |
53499008 |
agccaaggcaaaggtaacagagagcaacaattttacct |
53499045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 53492603 - 53492732
Alignment:
| Q |
94 |
aattcagctatcatcaaaaggtggtgcatgggatgaaattgactttgaattcttgggaaacttgagtggtgaaccatacattcttcacgccaatgtgttt |
193 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||| |
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| T |
53492603 |
aattcagctgtcatcaaaaggaggtgcatgggatgaaattgactttgaattcttgggaaatttgagtggtgatccttacatccttcataccaatgtgttt |
53492702 |
T |
|
| Q |
194 |
agccaaggaaaaggtaacagagagcaacaa |
223 |
Q |
| |
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|||||||| |||||| |||||||||||||| |
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| T |
53492703 |
agccaaggcaaaggtgacagagagcaacaa |
53492732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 53494978 - 53495082
Alignment:
| Q |
122 |
tgggatgaaattgactttgaattcttgggaaacttgagtggtgaaccatacattcttcacgccaatgtgtttagccaaggaaaaggtaacagagagcaac |
221 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||||||| |||||||||| ||||||| ||||||||||| | ||||||||||| || ||||| |||| |
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|
| T |
53494978 |
tgggatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaac |
53495077 |
T |
|
| Q |
222 |
aattc |
226 |
Q |
| |
|
||||| |
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|
| T |
53495078 |
aattc |
53495082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 53489437 - 53489331
Alignment:
| Q |
122 |
tgggatgaaattgactttgaattcttgggaaacttgagtggtgaaccatacattcttcacgccaatgtgtttagccaaggaaaaggtaacagagagcaac |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| || ||||| |||| | ||||||| | |||||| ||||| |||||||||||| |
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|
| T |
53489437 |
tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcatacaaatgtgtacacccaaggcaaaggggacagagagcaac |
53489338 |
T |
|
| Q |
222 |
aattcta |
228 |
Q |
| |
|
||||||| |
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|
| T |
53489337 |
aattcta |
53489331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 53502110 - 53502186
Alignment:
| Q |
158 |
agtggtgaaccatacattcttcacgccaatgtgtttagccaaggaaaaggtaacagagagcaacaattctacctatg |
234 |
Q |
| |
|
||||||||||||||||| |||||| | ||||| || || ||||| ||||| ||||| || ||||||||||| ||||| |
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|
| T |
53502110 |
agtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaacaattctatctatg |
53502186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 38214472 - 38214366
Alignment:
| Q |
125 |
gatgaaattgactttgaattcttgggaaacttgagtggtgaaccatacattcttcacgccaatgtgtttagccaaggaaaaggtaacagagagcaacaat |
224 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| | ||||| || || |||||||| ||| | || |||||| ||||| ||||| |||||||| ||||||| |
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| T |
38214472 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
38214373 |
T |
|
| Q |
225 |
tctacct |
231 |
Q |
| |
|
||||||| |
|
|
| T |
38214372 |
tctacct |
38214366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 38218691 - 38218585
Alignment:
| Q |
125 |
gatgaaattgactttgaattcttgggaaacttgagtggtgaaccatacattcttcacgccaatgtgtttagccaaggaaaaggtaacagagagcaacaat |
224 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| | ||||| || || |||||||| ||| | || |||||| ||||| ||||| |||||||| ||||||| |
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| T |
38218691 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
38218592 |
T |
|
| Q |
225 |
tctacct |
231 |
Q |
| |
|
||||||| |
|
|
| T |
38218591 |
tctacct |
38218585 |
T |
|
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