View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12361_low_1 (Length: 687)
Name: NF12361_low_1
Description: NF12361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12361_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 15 - 669
Target Start/End: Complemental strand, 35083900 - 35083246
Alignment:
| Q |
15 |
cagagatgaggaggctcaagcttgaactaaaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagccaagcagaaggcaatagagct |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35083900 |
cagagatgaggaggctcaagcttgaactaaaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagccaagcagaaggcaatagagct |
35083801 |
T |
|
| Q |
115 |
tcaacgttggagatccgaagaagaaaggaagttggaagaggcaagagaaggggaaggagctgctatggctatggtagagatggagcaagaaaaatgtaaa |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35083800 |
tcaacgttggagatccgaagaagaaaagaagttggaagaggcaagagaaggggaaggagcagctatggctatggtagagatggagcaagaaaaatgtaaa |
35083701 |
T |
|
| Q |
215 |
gctgcactaaaagcagctgaagcatctcagaagatcgcaacgttggaagcacaaaaacgaatgtatgtagagaagaaaagcgaaatggaagcaagtcaga |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35083700 |
gctgcactaaaagcagctgaagcatctcagaagatcgcaacgttggaagcacaaaaacgaatgtatgtagagaagaaaagcgaaatggaagcaagtcaga |
35083601 |
T |
|
| Q |
315 |
ggaaaaagacggaagattcttataccactgctagatacagacgatacagtattgaggaaattgaagaggcaacaaaccggttttccgatagtcttaaaat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35083600 |
ggaaaaagacggaagattcttataccactgctagatacagacgatacagtattgaggaaattgaagaggcaacaaaccggttttccgatagtcttaaaat |
35083501 |
T |
|
| Q |
415 |
tggtgaaggagggtatggtcctgttttcaaatgtgaacttgatcatacaccggttgctatcaaagtgttgaaatcagatgcagctcaaggaaggcaacaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35083500 |
tggtgaaggagggtatggtcctgttttcaaatgtgaacttgatcatacaccggttgctatcaaagtgttgaaatcagatgcagctcaaggaaggcaacaa |
35083401 |
T |
|
| Q |
515 |
tttaaccaggaagttgaagtgttgagttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtaca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35083400 |
tttaaccaggaagttgaagtgttgagttgtataagacatccaaacatggtccttctgttgggagcatgtccggaatttggttgcatagtgtacgagtaca |
35083301 |
T |
|
| Q |
615 |
tggctaatggaagtttggatgattgtttgtttaggagaggtaaacaaccacctct |
669 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35083300 |
tggctaatggaagtttggatgattgtttgtttaggagaggtaaacaaccacctct |
35083246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 639
Target Start/End: Original strand, 42522509 - 42522621
Alignment:
| Q |
527 |
gttgaagtgttgagttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaa |
626 |
Q |
| |
|
||||||||||||||| | ||||| |||||| ||||||| || || | |||||||||||||| ||||||||| | ||||| ||| ||||| | ||||||| |
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| T |
42522509 |
gttgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgcctggtgtatgagcacatgaccaatggaa |
42522608 |
T |
|
| Q |
627 |
gtttggatgattg |
639 |
Q |
| |
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| ||||||||||| |
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| T |
42522609 |
gcttggatgattg |
42522621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 639
Target Start/End: Original strand, 42530717 - 42530829
Alignment:
| Q |
527 |
gttgaagtgttgagttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaa |
626 |
Q |
| |
|
||||||||||||||| | ||||| |||||| ||||||| || || | |||||||||||||| ||||||||| | ||||| ||| ||||| | ||||||| |
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| T |
42530717 |
gttgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgcctggtgtatgagcacatgaccaatggaa |
42530816 |
T |
|
| Q |
627 |
gtttggatgattg |
639 |
Q |
| |
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| ||||||||||| |
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|
| T |
42530817 |
gcttggatgattg |
42530829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 42529911 - 42529960
Alignment:
| Q |
44 |
aaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagc |
93 |
Q |
| |
|
||||| || ||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
42529911 |
aaacaaacaatggaaatgtatagtacagcttgtaaggaagcactaacagc |
42529960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 42521715 - 42521755
Alignment:
| Q |
53 |
atggaaatgtatagttcagcttgcaaggaagcactcacagc |
93 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
42521715 |
atggaaatgtatagtacagcttgtaaggaagcactaacagc |
42521755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 639
Target Start/End: Complemental strand, 50439721 - 50439633
Alignment:
| Q |
551 |
catccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaagtttggatgattg |
639 |
Q |
| |
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|||||||||||||| || || || ||||| |||||||||| ||| || ||||||| ||||||||| | |||||||| ||||| ||||| |
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| T |
50439721 |
catccaaacatggttctcctcttaggagcctgtccggaatatggatgtctagtgtatgagtacatgtcaaatggaagcttggaagattg |
50439633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 640
Target Start/End: Original strand, 1273773 - 1273874
Alignment:
| Q |
539 |
agttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaagtttggatgatt |
638 |
Q |
| |
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||||| ||||| |||||||||||||| || || | ||||| |||||||||| || ||| | || || ||| ||||||| || |||||||||||||||| |
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| T |
1273773 |
agttgcataaggcatccaaacatggttctcctcctaggagcctgtccggaatacggctgccttgtttatgagcacatggcgaacggaagtttggatgatt |
1273872 |
T |
|
| Q |
639 |
gt |
640 |
Q |
| |
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|| |
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|
| T |
1273873 |
gt |
1273874 |
T |
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