View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12361_low_2 (Length: 528)
Name: NF12361_low_2
Description: NF12361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12361_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 155 - 524
Target Start/End: Original strand, 25483921 - 25484308
Alignment:
| Q |
155 |
cttaatcctcataaataagtctcttagagtgagtgttagatagagtattaaaggagagtgttcctagcatttctcttgttgttgttttgttttaagtcat |
254 |
Q |
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| T |
25483921 |
cttaatcctcataaataagtctcttagagtgagtgttaaatagagtattaaaggagagtgttcttagcatttctcttgt---tgttttgttttaagtcat |
25484017 |
T |
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| Q |
255 |
agtataataaacttccgtaatattggaacttgtctaattatttttgttgaagaaagaactggtgtctgcaatatacattgtagtctttatatagttgaaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25484018 |
agtataataaacttccgtaatattggaacttgtctaattatttttgttgaagaaagaactggtgtctgcaatattcattgtagtctttatatagttgaaa |
25484117 |
T |
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| Q |
355 |
taattaattagatgcattttcatatatagggacaatgtataagctgtttggtcctatgaataagc---------------------tgtttggtctgcca |
433 |
Q |
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| T |
25484118 |
taattaattagatgcattttcatatatagggacaatgtataagctgtttggtcctatgaataagctgtttggtcctatgaataagatgtttggtctgcca |
25484217 |
T |
|
| Q |
434 |
agagagggaggtacagcttctagttcttctacagattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcacaggttctg |
524 |
Q |
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| T |
25484218 |
agagagggaggtacagcttctagttcttctacagattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctg |
25484308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 25483809 - 25483885
Alignment:
| Q |
43 |
aacccaacaaacaatctctcccacagcaggtcaatgctctaagacctcacaaaagagggagatgccacatataccac |
119 |
Q |
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| T |
25483809 |
aacccaacaaacaatctctcccacagcaggtcaatgctctaagacctcacaaaagagggagatgccacatataccac |
25483885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 514
Target Start/End: Complemental strand, 35184068 - 35184021
Alignment:
| Q |
467 |
gattctaatagcaaccaaagctatagatacgatgtgttcatcagtttc |
514 |
Q |
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| T |
35184068 |
gattccaatagcatccaaagctatagatatgatgtgtttatcagtttc |
35184021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 5140015 - 5139963
Alignment:
| Q |
180 |
agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctctt |
231 |
Q |
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| T |
5140015 |
agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctctt |
5139963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 522
Target Start/End: Complemental strand, 500444 - 500398
Alignment:
| Q |
476 |
agcaaccaaagctatagatacgatgtgttcatcagtttcacaggttc |
522 |
Q |
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| T |
500444 |
agcatccaaagctatagatatgatgtgtttatcagtttcagaggttc |
500398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 30892243 - 30892296
Alignment:
| Q |
180 |
agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctcttg |
232 |
Q |
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||||||||||||||| ||||| || || ||||||||||||||||||||||||| |
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| T |
30892243 |
agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg |
30892296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 37306451 - 37306398
Alignment:
| Q |
180 |
agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctcttg |
232 |
Q |
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| T |
37306451 |
agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg |
37306398 |
T |
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