View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12361_low_3 (Length: 509)
Name: NF12361_low_3
Description: NF12361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12361_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 150 - 494
Target Start/End: Complemental strand, 51769656 - 51769313
Alignment:
| Q |
150 |
aggcaaggaatgagatatttccagttttccacaataaactttataacttggaggttttgaccaatttacacaagtaaataaatcttgcattggtaacaaa |
249 |
Q |
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| T |
51769656 |
aggcaaggaatgagatatttccaattttccacaataaactttataacttggagattttgaccaatttacacaagtaaataaatattgcattggtaacaaa |
51769557 |
T |
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| Q |
250 |
cctaattgctaaacttcatatcatatcacatttgatccgatggtaagactttttgatccattagcagaaacaaacctatgtataatgtaagatatgtttc |
349 |
Q |
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| T |
51769556 |
cctaattgctaaacttcatatcatatcacatttgatccgatggtaagactttttgatccattagcggaa-cagacctatctataatgtaagatttgtttc |
51769458 |
T |
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| Q |
350 |
acttatgcatcatattgatcattttcagaatattgtggccaatagatttgattatacctttgttttacatgctacttagtaactccttccttctcattgc |
449 |
Q |
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| T |
51769457 |
gcttatgcatcatattgatcatgttcagaatattgtggccaatagatttgattatacctttgttttacatgctacttagtaactccttccttctcattgc |
51769358 |
T |
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| Q |
450 |
attgagagactcaccgtatgtccccacaatctgttgtcttgagca |
494 |
Q |
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| T |
51769357 |
attgagagactcaccgtatgtccccacaatctgttgtcttgagca |
51769313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 51769787 - 51769722
Alignment:
| Q |
19 |
aatctaccacagttaaacatatgcagtttgtctcgtcttcttaaatctgtcattttgacccacaaa |
84 |
Q |
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| T |
51769787 |
aatctaccacagttaaacatatgcagtttgtctcgtcttcttaactctgtcattttgacccacaaa |
51769722 |
T |
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