View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12361_low_4 (Length: 460)
Name: NF12361_low_4
Description: NF12361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12361_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 259 - 443
Target Start/End: Complemental strand, 22187295 - 22187111
Alignment:
| Q |
259 |
actactactacaccatgatattgataaggtaaagttcctgcattacactgcacctcggttttcacttcctctcttttttcaagaacaccccatttttcaa |
358 |
Q |
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| T |
22187295 |
actactactacaccatgatattgataaggtaaagttcctgcattacactgcacctcggttttcacttcctctcttttttcaagaacaccccatttttcaa |
22187196 |
T |
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| Q |
359 |
cttcttcttcctgtttcatggacctgaatttcttaggttgttgttagacacactcacactgtgactgaggtacttctctccattc |
443 |
Q |
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| T |
22187195 |
cttcttcttcctgtttcatggacctgaatttcttaggttgttattagacatactcacactgtgactgaggtacttctctccattc |
22187111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 22187541 - 22187408
Alignment:
| Q |
17 |
agagtgaaatatataatgaatgggtaacagcatgtatgtatctatagactgtaagtgatcatgtgtgtcccttatcactcgcgtgccctaacctttctct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22187541 |
agagtgaaatatataatgaatgggtaacagcatgtatgtatctatagactgtaagtgatcatgtgtgtcccttatcactcgcgtgccctaacctttctct |
22187442 |
T |
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| Q |
117 |
ctttctcgcataataggcgctgaatctgacgtac |
150 |
Q |
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| T |
22187441 |
ctttctcgcataataggcgctgaatctgacgtac |
22187408 |
T |
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