View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12361_low_5 (Length: 356)
Name: NF12361_low_5
Description: NF12361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12361_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 35135865 - 35135577
Alignment:
| Q |
15 |
gtgtcacccgcaccgaatctggatctatacttatagtactcactacacctgcacaaacaaccgggcttgtccaaaacatccaaaccatggtacacacatc |
114 |
Q |
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| T |
35135865 |
gtgtcaaccgcaccgaatctggatctatacttatagtactcaatacacctgcacaaacaaccaggcttgtccaaaacatccaaaccatggtacacacatc |
35135766 |
T |
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| Q |
115 |
aaccaaaaacacaaccccatttgaaatcaagtaaaacatcagtttcatcgaatattaatactagtagaatcacaaaatcaatcaacaagaaatttcaaat |
214 |
Q |
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| T |
35135765 |
aaccaaaaacaaaaccccatttgaaatcaagtaaaacatcagtttcatcgaatattaatactagtagaatcacaaaatcaatcaacaagaaatttcaaat |
35135666 |
T |
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| Q |
215 |
ttcaaatcctagagatgagtcacaagcaggaatataaattgaaataaattcttaataatttgaagtagagtcaatatattgtcccctac |
303 |
Q |
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| T |
35135665 |
ttcaaatcctagagatgagtcacaagcaggaatataaattgaaataaattcttaataatttgaagtagagtcaatatattgtcccctac |
35135577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 68 - 303
Target Start/End: Complemental strand, 35144085 - 35143849
Alignment:
| Q |
68 |
caaacaaccgggcttgtccaaaacatccaaaccatggtacacacatcaaccaaaaacacaaccccatttgaaatcaagtaaaacatcagtttcatcgaat |
167 |
Q |
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| T |
35144085 |
caaacaacaaggcttgtccaaaacttccaaaccatggtactcacatcaaccaaaaacaaaacctcatttgaaatcaagtaaagcatcagtttcatcaaat |
35143986 |
T |
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| Q |
168 |
attaatactagtagaatcacaaaatcaatcaacaagaaatttcaaatttcaaatcctagagatgagtcacaagcaggaatataaattgaaataaattctt |
267 |
Q |
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| T |
35143985 |
attaatactagtagaatcacaaaatcgatcaacaagaaatttcaaatttcaaatcctagagatgagtcacaagcaggaatataaattcaaataaattctt |
35143886 |
T |
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| Q |
268 |
aataatttgaagtagagtc-aatatattgtcccctac |
303 |
Q |
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| T |
35143885 |
aataatttaaagtagagtcaaatatattgtcccctac |
35143849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 35144441 - 35144382
Alignment:
| Q |
30 |
aatctggatctatacttatagtactcactacacctgcacaaacaaccgggcttgtccaaa |
89 |
Q |
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| T |
35144441 |
aatccggatccatacttgtagtacccaatacacctggccaaacaaccgggcttgtccaaa |
35144382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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