View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12361_low_8 (Length: 240)

Name: NF12361_low_8
Description: NF12361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12361_low_8
NF12361_low_8
[»] chr3 (2 HSPs)
chr3 (130-219)||(49986913-49987002)
chr3 (31-60)||(49986424-49986453)
[»] chr8 (1 HSPs)
chr8 (137-219)||(42302858-42302940)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 49986913 - 49987002
Alignment:
Q  130 tttattaattaagtgctgaatataaagcattttcccattcttagagctattgcaactgatgtttttaaagagctttttactccatctccc 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49986913 tttattaattaattgctgaatataaagcattttcccattcttagagctattgcaactgatgtttttaaagagctttttactccatctccc 49987002  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 49986424 - 49986453
Alignment:
Q  31 catatactttcactttcatacacctaagaa 60  Q
    ||||||||||||||||||||||||||||||    
T  49986424 catatactttcactttcatacacctaagaa 49986453  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 42302940 - 42302858
Alignment:
Q  137 attaagtgctgaatataaagcattttcccattcttagagctattgcaactgatgtttttaaagagctttttactccatctccc 219  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||   || |||| | |||| ||||||||||||||||||    
T  42302940 attatgtgcttaacataaagcattttcccattcttagagctattgcagtggaagtttgtgaagaactttttactccatctccc 42302858  T

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