View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_high_11 (Length: 254)
Name: NF12362_high_11
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 38895065 - 38894826
Alignment:
| Q |
15 |
gtgttgaaagcatctgctgtaaacagactgcaaccacagctaatattaaaagagggtcaaacattttgcgtctgtctaacttcagcattctattctttgt |
114 |
Q |
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| T |
38895065 |
gtgttgaaagcatctgctgtaaacatattgcaaccacagctaatattaaaagagggtcaaacattttgcgtctgtctaacttcagcattctattctttgt |
38894966 |
T |
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| Q |
115 |
tagtattcacacaaggaaataaaaactgatgaatattgattctttgataattatattcatatagttccgtgcaagtcttttaataacaccaactaaaaat |
214 |
Q |
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| T |
38894965 |
tagtattcacacaaggaaataaaaactgatgaatattgattctttgataattatattcatatagttccgtgcaagtcttttaataacaccaactaaaaat |
38894866 |
T |
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| Q |
215 |
aatttattggaacactgacacaacagaaagtaacaaagga |
254 |
Q |
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| T |
38894865 |
aatttattggaacactgacacaacagaaagtaacaaagga |
38894826 |
T |
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 1278773 - 1278687
Alignment:
| Q |
15 |
gtgttgaaagcatctgctgtaaacagactgcaaccacagctaatatta-aaagagggtcaaacattttgcgtctgtctaacttcagc |
100 |
Q |
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|||||| ||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||| |
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| T |
1278773 |
gtgttggaagcatctggtgtaaacagactgcaaccacaactaatattattataagggtcaaacattttgcgtctgtccaacttcagc |
1278687 |
T |
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